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deal.II version GIT relicensing-2167-g9622207b8f 2024-11-21 12:40:00+00:00
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deal.II version GIT relicensing-2167-g9622207b8f 2024-11-21 12:40:00+00:00
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#include <deal.II/lac/trilinos_tpetra_block_vector.h>
Public Types | |
| using | BaseClass = ::BlockVectorBase< TpetraWrappers::Vector< Number, MemorySpace > > |
| using | BlockType = typename BaseClass::BlockType |
| using | value_type = typename BaseClass::value_type |
| using | pointer = typename BaseClass::pointer |
| using | const_pointer = typename BaseClass::const_pointer |
| using | reference = typename BaseClass::reference |
| using | const_reference = typename BaseClass::const_reference |
| using | size_type = typename BaseClass::size_type |
| using | iterator = typename BaseClass::iterator |
| using | const_iterator = typename BaseClass::const_iterator |
| using | real_type = typename BlockType::real_type |
Public Member Functions | |
| BlockVector ()=default | |
| BlockVector (const std::vector< IndexSet > ¶llel_partitioning, const MPI_Comm communicator=MPI_COMM_WORLD) | |
| BlockVector (const std::vector< IndexSet > ¶llel_partitioning, const std::vector< IndexSet > &ghost_values, const MPI_Comm communicator, const bool vector_writable=false) | |
| BlockVector (const BlockVector< Number, MemorySpace > &v) | |
| BlockVector (const size_type num_blocks) | |
| ~BlockVector () override=default | |
| BlockVector< Number, MemorySpace > & | operator= (const Number s) |
| BlockVector< Number, MemorySpace > & | operator= (const BlockVector< Number, MemorySpace > &v) |
| void | reinit (const std::vector< IndexSet > ¶llel_partitioning, const MPI_Comm communicator=MPI_COMM_WORLD, const bool omit_zeroing_entries=false) |
| void | reinit (const std::vector< IndexSet > &partitioning, const std::vector< IndexSet > &ghost_values, const MPI_Comm communicator=MPI_COMM_WORLD, const bool vector_writable=false) |
| void | reinit (const BlockVector< Number, MemorySpace > &V, const bool omit_zeroing_entries=false) |
| void | reinit (const size_type num_blocks) |
| bool | has_ghost_elements () const |
| void | print (std::ostream &out, const unsigned int precision=3, const bool scientific=true, const bool across=true) const |
| void | collect_sizes () |
| void | compress (VectorOperation::values operation) |
| BlockType & | block (const unsigned int i) |
| const BlockType & | block (const unsigned int i) const |
| const BlockIndices & | get_block_indices () const |
| unsigned int | n_blocks () const |
| virtual size_type | size () const override |
| std::size_t | locally_owned_size () const |
| IndexSet | locally_owned_elements () const |
| iterator | begin () |
| const_iterator | begin () const |
| iterator | end () |
| const_iterator | end () const |
| value_type | operator() (const size_type i) const |
| reference | operator() (const size_type i) |
| value_type | operator[] (const size_type i) const |
| reference | operator[] (const size_type i) |
| template<typename OtherNumber > | |
| void | extract_subvector_to (const std::vector< size_type > &indices, std::vector< OtherNumber > &values) const |
| virtual void | extract_subvector_to (const ArrayView< const types::global_dof_index > &indices, const ArrayView< value_type > &entries) const override |
| template<typename ForwardIterator , typename OutputIterator > | |
| void | extract_subvector_to (ForwardIterator indices_begin, const ForwardIterator indices_end, OutputIterator values_begin) const |
| virtual void | extract_subvector_to (const ArrayView< const types::global_dof_index > &indices, const ArrayView< VectorType::value_type > &elements) const=0 |
| template<typename VectorType2 > | |
| bool | operator== (const BlockVectorBase< VectorType2 > &v) const |
| value_type | operator* (const BlockVectorBase &V) const |
| real_type | norm_sqr () const |
| value_type | mean_value () const |
| real_type | l1_norm () const |
| real_type | l2_norm () const |
| real_type | linfty_norm () const |
| value_type | add_and_dot (const value_type a, const BlockVectorBase &V, const BlockVectorBase &W) |
| bool | in_local_range (const size_type global_index) const |
| bool | all_zero () const |
| bool | is_non_negative () const |
| BlockVectorBase & | operator+= (const BlockVectorBase &V) |
| BlockVectorBase & | operator-= (const BlockVectorBase &V) |
| template<typename Number > | |
| void | add (const std::vector< size_type > &indices, const std::vector< Number > &values) |
| template<typename Number > | |
| void | add (const std::vector< size_type > &indices, const Vector< Number > &values) |
| template<typename Number > | |
| void | add (const size_type n_elements, const size_type *indices, const Number *values) |
| void | add (const value_type s) |
| void | add (const value_type a, const BlockVectorBase &V) |
| void | add (const value_type a, const BlockVectorBase &V, const value_type b, const BlockVectorBase &W) |
| void | sadd (const value_type s, const BlockVectorBase &V) |
| void | sadd (const value_type s, const value_type a, const BlockVectorBase &V) |
| void | sadd (const value_type s, const value_type a, const BlockVectorBase &V, const value_type b, const BlockVectorBase &W) |
| void | sadd (const value_type s, const value_type a, const BlockVectorBase &V, const value_type b, const BlockVectorBase &W, const value_type c, const BlockVectorBase &X) |
| BlockVectorBase & | operator*= (const value_type factor) |
| BlockVectorBase & | operator/= (const value_type factor) |
| template<class BlockVector2 > | |
| void | scale (const BlockVector2 &v) |
| template<class BlockVector2 > | |
| void | equ (const value_type a, const BlockVector2 &V) |
| void | update_ghost_values () const |
| MPI_Comm | get_mpi_communicator () const |
| std::size_t | memory_consumption () const |
| template<class Archive > | |
| void | serialize (Archive &ar, const unsigned int version) |
EnableObserverPointer functionality | |
Classes derived from EnableObserverPointer provide a facility to subscribe to this object. This is mostly used by the ObserverPointer class. | |
| void | subscribe (std::atomic< bool > *const validity, const std::string &identifier="") const |
| void | unsubscribe (std::atomic< bool > *const validity, const std::string &identifier="") const |
| unsigned int | n_subscriptions () const |
| template<typename StreamType > | |
| void | list_subscribers (StreamType &stream) const |
| void | list_subscribers () const |
Static Public Member Functions | |
| static ::ExceptionBase & | ExcInUse (int arg1, std::string arg2, std::string arg3) |
| static ::ExceptionBase & | ExcNoSubscriber (std::string arg1, std::string arg2) |
Protected Attributes | |
| std::vector< VectorType > | components |
| BlockIndices | block_indices |
Private Types | |
| using | map_value_type = decltype(counter_map)::value_type |
| using | map_iterator = decltype(counter_map)::iterator |
Private Member Functions | |
| void | check_no_subscribers () const noexcept |
Private Attributes | |
| std::atomic< unsigned int > | counter |
| std::map< std::string, unsigned int > | counter_map |
| std::vector< std::atomic< bool > * > | validity_pointers |
| const std::type_info * | object_info |
Static Private Attributes | |
| static std::mutex | mutex |
An implementation of block vectors based on the vector class implemented in LinearAlgebra::TpetraWrappers. While the base class provides for most of the interface, this class handles the actual allocation of vectors and provides functions that are specific to the underlying vector type.
The model of distribution of data is such that each of the blocks is distributed across all MPI processes named in the MPI communicator. I.e. we don't just distribute the whole vector, but each component. In the constructors and reinit() functions, one therefore not only has to specify the sizes of the individual blocks, but also the number of elements of each of these blocks to be stored on the local process.
Definition at line 75 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::BaseClass = ::BlockVectorBase<TpetraWrappers::Vector<Number, MemorySpace> > |
Typedef the base class for simpler access to its own alias.
Definition at line 82 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::BlockType = typename BaseClass::BlockType |
Typedef the type of the underlying vector.
Definition at line 88 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::value_type = typename BaseClass::value_type |
Import the alias from the base class.
Definition at line 93 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::pointer = typename BaseClass::pointer |
Definition at line 94 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::const_pointer = typename BaseClass::const_pointer |
Definition at line 95 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::reference = typename BaseClass::reference |
Definition at line 96 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::const_reference = typename BaseClass::const_reference |
Definition at line 97 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::size_type = typename BaseClass::size_type |
Definition at line 98 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::iterator = typename BaseClass::iterator |
Definition at line 99 of file trilinos_tpetra_block_vector.h.
| using LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::const_iterator = typename BaseClass::const_iterator |
Definition at line 100 of file trilinos_tpetra_block_vector.h.
|
inherited |
Declare a type that has holds real-valued numbers with the same precision as the template argument to this class. If the template argument of this class is a real data type, then real_type equals the template argument. If the template argument is a std::complex type then real_type equals the type underlying the complex numbers.
This alias is used to represent the return type of norms.
Definition at line 478 of file block_vector_base.h.
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privateinherited |
The data type used in counter_map.
Definition at line 238 of file enable_observer_pointer.h.
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privateinherited |
The iterator type used in counter_map.
Definition at line 243 of file enable_observer_pointer.h.
|
default |
Default constructor. Generate an empty vector without any blocks.
| LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::BlockVector | ( | const std::vector< IndexSet > & | parallel_partitioning, |
| const MPI_Comm | communicator = MPI_COMM_WORLD |
||
| ) |
Constructor. Generate a block vector with as many blocks as there are entries in partitioning. Each IndexSet together with the MPI communicator contains the layout of the distribution of data among the MPI processes.
| LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::BlockVector | ( | const std::vector< IndexSet > & | parallel_partitioning, |
| const std::vector< IndexSet > & | ghost_values, | ||
| const MPI_Comm | communicator, | ||
| const bool | vector_writable = false |
||
| ) |
Creates a BlockVector with ghost elements. See the respective reinit() method for more details. ghost_values may contain any elements in parallel_partitioning, they will be ignored.
| LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::BlockVector | ( | const BlockVector< Number, MemorySpace > & | v | ) |
Copy-Constructor. Set all the properties of the parallel vector to those of the given argument and copy the elements.
|
explicit |
Creates a block vector consisting of num_blocks components, but there is no content in the individual components and the user has to fill appropriate data using a reinit of the blocks.
|
overridedefault |
Destructor. Clears memory
| BlockVector< Number, MemorySpace > & LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::operator= | ( | const Number | s | ) |
Copy operator: fill all components of the vector that are locally stored with the given scalar value.
| BlockVector< Number, MemorySpace > & LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::operator= | ( | const BlockVector< Number, MemorySpace > & | v | ) |
Copy operator for arguments of the same type. Resize the present vector if necessary to the correct number of blocks, then copy the individual blocks from v using the copy-assignment operator of the class that represents the individual blocks.
Copying the vectors that make up individual blocks can have complex semantics in parallel vector classes. See the information provided by the class used to represent the individual blocks.
| void LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::reinit | ( | const std::vector< IndexSet > & | parallel_partitioning, |
| const MPI_Comm | communicator = MPI_COMM_WORLD, |
||
| const bool | omit_zeroing_entries = false |
||
| ) |
Reinitialize the BlockVector to contain as many blocks as there are index sets given in the input argument, according to the parallel distribution of the individual components described in the maps.
If omit_zeroing_entries==false, the vector is filled with zeros.
| void LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::reinit | ( | const std::vector< IndexSet > & | partitioning, |
| const std::vector< IndexSet > & | ghost_values, | ||
| const MPI_Comm | communicator = MPI_COMM_WORLD, |
||
| const bool | vector_writable = false |
||
| ) |
Reinit functionality. This function destroys the old vector content and generates a new one based on the input partitioning. In addition to just specifying one index set as in all the other methods above, this method allows to supply an additional set of ghost entries. There are two different versions of a vector that can be created. If the flag vector_writable is set to false, the vector only allows read access to the joint set of parallel_partitioning and ghost_entries. The effect of the reinit method is then equivalent to calling the other reinit method with an index set containing both the locally owned entries and the ghost entries.
If the flag vector_writable is set to true, this creates an alternative storage scheme for ghost elements that allows multiple threads to write into the vector (for the other reinit methods, only one thread is allowed to write into the ghost entries at a time).
| void LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::reinit | ( | const BlockVector< Number, MemorySpace > & | V, |
| const bool | omit_zeroing_entries = false |
||
| ) |
Change the dimension to that of the vector V. The same applies as for the other reinit() function.
The elements of V are not copied, i.e. this function is the same as calling reinit (V.size(), omit_zeroing_entries).
Note that you must call this (or the other reinit() functions) function, rather than calling the reinit() functions of an individual block, to allow the block vector to update its caches of vector sizes. If you call reinit() on one of the blocks, then subsequent actions on this object may yield unpredictable results since they may be routed to the wrong block.
| void LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::reinit | ( | const size_type | num_blocks | ) |
Change the number of blocks to num_blocks. The individual blocks will get initialized with zero size, so it is assumed that the user resizes the individual blocks by herself in an appropriate way, and calls collect_sizes afterwards.
| bool LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::has_ghost_elements | ( | ) | const |
Return if this Vector contains ghost elements.
| void LinearAlgebra::TpetraWrappers::BlockVector< Number, MemorySpace >::print | ( | std::ostream & | out, |
| const unsigned int | precision = 3, |
||
| const bool | scientific = true, |
||
| const bool | across = true |
||
| ) | const |
Print to a stream.
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inherited |
Update internal structures after resizing vectors. Whenever you reinited a block of a block vector, the internal data structures are corrupted. Therefore, you should call this function after all blocks got their new size.
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inherited |
Call the compress() function on all the subblocks of the vector.
This functionality only needs to be called if using MPI based vectors and exists in other objects for compatibility.
See Compressing distributed objects for more information.
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inherited |
Access to a single block.
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inherited |
Read-only access to a single block.
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inherited |
Return a reference on the object that describes the mapping between block and global indices. The use of this function is highly deprecated and it should vanish in one of the next versions
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inherited |
Number of blocks.
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overridevirtualinherited |
Return dimension of the vector. This is the sum of the dimensions of all components.
Implements ReadVector< VectorType::value_type >.
Reimplemented in LinearAlgebra::distributed::BlockVector< Number >.
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inherited |
Return local dimension of the vector. This is the sum of the local dimensions (i.e., values stored on the current processor) of all components.
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inherited |
Return an index set that describes which elements of this vector are owned by the current processor. Note that this index set does not include elements this vector may store locally as ghost elements but that are in fact owned by another processor. As a consequence, the index sets returned on different processors if this is a distributed vector will form disjoint sets that add up to the complete index set. Obviously, if a vector is created on only one processor, then the result would satisfy
For block vectors, this function returns the union of the locally owned elements of the individual blocks, shifted by their respective index offsets.
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inherited |
Return an iterator pointing to the first element.
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inherited |
Return an iterator pointing to the first element of a constant block vector.
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inherited |
Return an iterator pointing to the element past the end.
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inherited |
Return an iterator pointing to the element past the end of a constant block vector.
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inherited |
Access components, returns U(i).
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inherited |
Access components, returns U(i) as a writeable reference.
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inherited |
Access components, returns U(i).
Exactly the same as operator().
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inherited |
Access components, returns U(i) as a writeable reference.
Exactly the same as operator().
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inherited |
Instead of getting individual elements of a vector via operator(), this function allows getting a whole set of elements at once. The indices of the elements to be read are stated in the first argument, the corresponding values are returned in the second.
If the current vector is called v, then this function is the equivalent to the code
indices and values arrays must be identical.
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overridevirtualinherited |
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inherited |
Instead of getting individual elements of a vector via operator(), this function allows getting a whole set of elements at once. In contrast to the previous function, this function obtains the indices of the elements by dereferencing all elements of the iterator range provided by the first two arguments, and puts the vector values into memory locations obtained by dereferencing a range of iterators starting at the location pointed to by the third argument.
If the current vector is called v, then this function is the equivalent to the code
values_begin as there are iterators between indices_begin and indices_end.
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pure virtualinherited |
Extract a subset of the vector specified by indices into the output array elements.
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inherited |
Check for equality of two block vector types. This operation is only allowed if the two vectors already have the same block structure.
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inherited |
\(U = U * V\): scalar product.
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inherited |
Return the square of the \(l_2\)-norm.
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inherited |
Return the mean value of the elements of this vector.
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inherited |
Return the \(l_1\)-norm of the vector, i.e. the sum of the absolute values.
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inherited |
Return the \(l_2\)-norm of the vector, i.e. the square root of the sum of the squares of the elements.
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inherited |
Return the maximum absolute value of the elements of this vector, which is the \(l_\infty\)-norm of a vector.
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inherited |
Performs a combined operation of a vector addition and a subsequent inner product, returning the value of the inner product. In other words, the result of this function is the same as if the user called
The reason this function exists is that this operation involves less memory transfer than calling the two functions separately on deal.II's vector classes (Vector<Number> and LinearAlgebra::distributed::Vector<double>). This method only needs to load three vectors, this, V, W, whereas calling separate methods means to load the calling vector this twice. Since most vector operations are memory transfer limited, this reduces the time by 25% (or 50% if W equals this).
For complex-valued vectors, the scalar product in the second step is implemented as \(\left<v,w\right>=\sum_i v_i \bar{w_i}\).
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inherited |
Return true if the given global index is in the local range of this processor. Asks the corresponding block.
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inherited |
Return whether the vector contains only elements with value zero. This function is mainly for internal consistency check and should seldom be used when not in debug mode since it uses quite some time.
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inherited |
Return true if the vector has no negative entries, i.e. all entries are zero or positive. This function is used, for example, to check whether refinement indicators are really all positive (or zero).
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inherited |
Addition operator. Fast equivalent to U.add(1, V).
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inherited |
Subtraction operator. Fast equivalent to U.add(-1, V).
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inherited |
A collective add operation: This function adds a whole set of values stored in values to the vector components specified by indices.
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inherited |
This is a second collective add operation. As a difference, this function takes a deal.II vector of values.
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inherited |
Take an address where n_elements are stored contiguously and add them into the vector. Handles all cases which are not covered by the other two add() functions above.
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inherited |
\(U(0-DIM)+=s\). Addition of s to all components. Note that s is a scalar and not a vector.
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inherited |
U+=a*V. Simple addition of a scaled vector.
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inherited |
U+=a*V+b*W. Multiple addition of scaled vectors.
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inherited |
U=s*U+V. Scaling and simple vector addition.
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inherited |
U=s*U+a*V. Scaling and simple addition.
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inherited |
U=s*U+a*V+b*W. Scaling and multiple addition.
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inherited |
U=s*U+a*V+b*W+c*X. Scaling and multiple addition.
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inherited |
Scale each element of the vector by a constant value.
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inherited |
Scale each element of the vector by the inverse of the given value.
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inherited |
Multiply each element of this vector by the corresponding element of v.
|
inherited |
U=a*V. Assignment.
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inherited |
Update the ghost values by calling update_ghost_values for each block.
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inherited |
This function returns the MPI communicator of the vector in the underlying blocks or, if the vector has not been initialized, the empty MPI_COMM_SELF.
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inherited |
Determine an estimate for the memory consumption (in bytes) of this object.
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inherited |
Subscribes a user of the object by storing the pointer validity. The subscriber may be identified by text supplied as identifier.
Definition at line 131 of file enable_observer_pointer.cc.
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inherited |
Unsubscribes a user from the object.
identifier and the validity pointer must be the same as the one supplied to subscribe(). Definition at line 151 of file enable_observer_pointer.cc.
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inlineinherited |
Return the present number of subscriptions to this object. This allows to use this class for reference counted lifetime determination where the last one to unsubscribe also deletes the object.
Definition at line 322 of file enable_observer_pointer.h.
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inlineinherited |
List the subscribers to the input stream.
Definition at line 339 of file enable_observer_pointer.h.
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inherited |
List the subscribers to deallog.
Definition at line 199 of file enable_observer_pointer.cc.
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inlineinherited |
Read or write the data of this object to or from a stream for the purpose of serialization using the BOOST serialization library.
This function does not actually serialize any of the member variables of this class. The reason is that what this class stores is only who subscribes to this object, but who does so at the time of storing the contents of this object does not necessarily have anything to do with who subscribes to the object when it is restored. Consequently, we do not want to overwrite the subscribers at the time of restoring, and then there is no reason to write the subscribers out in the first place.
Definition at line 331 of file enable_observer_pointer.h.
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privatenoexceptinherited |
Check that there are no objects subscribing to this object. If this check passes then it is safe to destroy the current object. It this check fails then this function will either abort or print an error message to deallog (by using the AssertNothrow mechanism), but will not throw an exception.
Definition at line 53 of file enable_observer_pointer.cc.
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protectedinherited |
Pointer to the array of components.
Definition at line 969 of file block_vector_base.h.
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protectedinherited |
Object managing the transformation between global indices and indices within the different blocks.
Definition at line 975 of file block_vector_base.h.
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mutableprivateinherited |
Store the number of objects which subscribed to this object. Initially, this number is zero, and upon destruction it shall be zero again (i.e. all objects which subscribed should have unsubscribed again).
The creator (and owner) of an object is counted in the map below if HE manages to supply identification.
We use the mutable keyword in order to allow subscription to constant objects also.
This counter may be read from and written to concurrently in multithreaded code: hence we use the std::atomic class template.
Definition at line 227 of file enable_observer_pointer.h.
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mutableprivateinherited |
In this map, we count subscriptions for each different identification string supplied to subscribe().
Definition at line 233 of file enable_observer_pointer.h.
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mutableprivateinherited |
In this vector, we store pointers to the validity bool in the ObserverPointer objects that subscribe to this class.
Definition at line 249 of file enable_observer_pointer.h.
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mutableprivateinherited |
Pointer to the typeinfo object of this object, from which we can later deduce the class name. Since this information on the derived class is neither available in the destructor, nor in the constructor, we obtain it in between and store it here.
Definition at line 257 of file enable_observer_pointer.h.
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staticprivateinherited |
A mutex used to ensure data consistency when accessing the mutable members of this class. This lock is used in the subscribe() and unsubscribe() functions, as well as in list_subscribers().
Definition at line 280 of file enable_observer_pointer.h.
1.9.8