Reference documentation for deal.II version GIT a189bc2bdf 2022-12-07 02:45:02+00:00
\(\newcommand{\dealvcentcolon}{\mathrel{\mathop{:}}}\) \(\newcommand{\dealcoloneq}{\dealvcentcolon\mathrel{\mkern-1.2mu}=}\) \(\newcommand{\jump}[1]{\left[\!\left[ #1 \right]\!\right]}\) \(\newcommand{\average}[1]{\left\{\!\left\{ #1 \right\}\!\right\}}\)
Public Types | Public Member Functions | Static Public Member Functions | Private Types | Private Member Functions | Private Attributes | Static Private Attributes | List of all members
LinearAlgebra::EpetraWrappers::Vector Class Reference

#include <deal.II/lac/trilinos_epetra_vector.h>

Inheritance diagram for LinearAlgebra::EpetraWrappers::Vector:
[legend]

Public Types

using value_type = double
 
using size_type = types::global_dof_index
 
using real_type = typename numbers::NumberTraits< double >::real_type
 

Public Member Functions

 Vector ()
 
 Vector (const Vector &V)
 
 Vector (const IndexSet &parallel_partitioner, const MPI_Comm &communicator)
 
void reinit (const IndexSet &parallel_partitioner, const MPI_Comm &communicator, const bool omit_zeroing_entries=false)
 
virtual void reinit (const VectorSpaceVector< double > &V, const bool omit_zeroing_entries=false) override
 
Vectoroperator= (const Vector &V)
 
virtual Vectoroperator= (const double s) override
 
virtual void import (const ReadWriteVector< double > &V, VectorOperation::values operation, std::shared_ptr< const Utilities::MPI::CommunicationPatternBase > communication_pattern={}) override
 
virtual Vectoroperator*= (const double factor) override
 
virtual Vectoroperator/= (const double factor) override
 
virtual Vectoroperator+= (const VectorSpaceVector< double > &V) override
 
virtual Vectoroperator-= (const VectorSpaceVector< double > &V) override
 
virtual double operator* (const VectorSpaceVector< double > &V) const override
 
virtual void add (const double a) override
 
virtual void add (const double a, const VectorSpaceVector< double > &V) override
 
virtual void add (const double a, const VectorSpaceVector< double > &V, const double b, const VectorSpaceVector< double > &W) override
 
virtual void sadd (const double s, const double a, const VectorSpaceVector< double > &V) override
 
virtual void scale (const VectorSpaceVector< double > &scaling_factors) override
 
virtual void equ (const double a, const VectorSpaceVector< double > &V) override
 
virtual bool all_zero () const override
 
virtual double mean_value () const override
 
virtual double l1_norm () const override
 
virtual double l2_norm () const override
 
virtual double linfty_norm () const override
 
virtual double add_and_dot (const double a, const VectorSpaceVector< double > &V, const VectorSpaceVector< double > &W) override
 
bool has_ghost_elements () const
 
virtual size_type size () const override
 
size_type locally_owned_size () const
 
MPI_Comm get_mpi_communicator () const
 
virtual ::IndexSet locally_owned_elements () const override
 
const Epetra_FEVector & trilinos_vector () const
 
Epetra_FEVector & trilinos_vector ()
 
virtual void print (std::ostream &out, const unsigned int precision=3, const bool scientific=true, const bool across=true) const override
 
virtual std::size_t memory_consumption () const override
 
virtual void compress (VectorOperation::values)
 
template<class Archive >
void serialize (Archive &ar, const unsigned int version)
 
Subscriptor functionality

Classes derived from Subscriptor provide a facility to subscribe to this object. This is mostly used by the SmartPointer class.

void subscribe (std::atomic< bool > *const validity, const std::string &identifier="") const
 
void unsubscribe (std::atomic< bool > *const validity, const std::string &identifier="") const
 
unsigned int n_subscriptions () const
 
template<typename StreamType >
void list_subscribers (StreamType &stream) const
 
void list_subscribers () const
 

Static Public Member Functions

static ::ExceptionBaseExcDifferentParallelPartitioning ()
 
static ::ExceptionBaseExcVectorTypeNotCompatible ()
 
static ::ExceptionBaseExcTrilinosError (int arg1)
 
static ::ExceptionBaseExcInUse (int arg1, std::string arg2, std::string arg3)
 
static ::ExceptionBaseExcNoSubscriber (std::string arg1, std::string arg2)
 

Private Types

using map_value_type = decltype(counter_map)::value_type
 
using map_iterator = decltype(counter_map)::iterator
 

Private Member Functions

void create_epetra_comm_pattern (const IndexSet &source_index_set, const MPI_Comm &mpi_comm)
 
void check_no_subscribers () const noexcept
 

Private Attributes

std::unique_ptr< Epetra_FEVector > vector
 
::IndexSet source_stored_elements
 
std::shared_ptr< const CommunicationPatternepetra_comm_pattern
 
std::atomic< unsigned int > counter
 
std::map< std::string, unsigned int > counter_map
 
std::vector< std::atomic< bool > * > validity_pointers
 
const std::type_info * object_info
 

Static Private Attributes

static std::mutex mutex
 

Detailed Description

This class implements a wrapper to the Trilinos distributed vector class Epetra_FEVector. This class is derived from the LinearAlgebra::VectorSpaceVector class. Note however that Epetra only works with Number = double. This class requires Trilinos to be compiled with MPI support.

Definition at line 64 of file trilinos_epetra_vector.h.

Member Typedef Documentation

◆ value_type

Definition at line 59 of file vector_space_vector.h.

◆ size_type

Definition at line 60 of file vector_space_vector.h.

◆ real_type

Definition at line 61 of file vector_space_vector.h.

◆ map_value_type

using Subscriptor::map_value_type = decltype(counter_map)::value_type
privateinherited

The data type used in counter_map.

Definition at line 230 of file subscriptor.h.

◆ map_iterator

using Subscriptor::map_iterator = decltype(counter_map)::iterator
privateinherited

The iterator type used in counter_map.

Definition at line 235 of file subscriptor.h.

Constructor & Destructor Documentation

◆ Vector() [1/3]

Vector< Number >::Vector ( )

Constructor. Create a vector of dimension zero.

Definition at line 41 of file trilinos_epetra_vector.cc.

◆ Vector() [2/3]

Vector< Number >::Vector ( const Vector V)

Copy constructor. Sets the dimension and the partitioning to that of the given vector and copies all elements.

Definition at line 49 of file trilinos_epetra_vector.cc.

◆ Vector() [3/3]

Vector< Number >::Vector ( const IndexSet parallel_partitioner,
const MPI_Comm &  communicator 
)
explicit

This constructor takes an IndexSet that defines how to distribute the individual components among the MPI processors. Since it also includes information about the size of the vector, this is all we need to generate a parallel vector.

Definition at line 56 of file trilinos_epetra_vector.cc.

Member Function Documentation

◆ reinit() [1/2]

void Vector< Number >::reinit ( const IndexSet parallel_partitioner,
const MPI_Comm &  communicator,
const bool  omit_zeroing_entries = false 
)

Reinit functionality. This function destroys the old vector content and generates a new one based on the input partitioning. The flag omit_zeroing_entries determines whether the vector should be filled with zero (false) or left untouched (true).

Definition at line 66 of file trilinos_epetra_vector.cc.

◆ reinit() [2/2]

void Vector< Number >::reinit ( const VectorSpaceVector< double > &  V,
const bool  omit_zeroing_entries = false 
)
overridevirtual

Change the dimension to that of the vector V. The elements of V are not copied.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 85 of file trilinos_epetra_vector.cc.

◆ operator=() [1/2]

Vector & Vector< Number >::operator= ( const Vector V)

Copy function. This function takes a Vector and copies all the elements. The Vector will have the same parallel distribution as V.

Definition at line 103 of file trilinos_epetra_vector.cc.

◆ operator=() [2/2]

Vector & Vector< Number >::operator= ( const double  s)
overridevirtual

Sets all elements of the vector to the scalar s. This operation is only allowed if s is equal to zero.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 133 of file trilinos_epetra_vector.cc.

◆ import()

void Vector< Number >::import ( const ReadWriteVector< double > &  V,
VectorOperation::values  operation,
std::shared_ptr< const Utilities::MPI::CommunicationPatternBase communication_pattern = {} 
)
overridevirtual

Imports all the elements present in the vector's IndexSet from the input vector V. VectorOperation::values operation is used to decide if the elements in V should be added to the current vector or replace the current elements. The last parameter can be used if the same communication pattern is used multiple times. This can be used to improve performance.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 147 of file trilinos_epetra_vector.cc.

◆ operator*=()

Vector & Vector< Number >::operator*= ( const double  factor)
overridevirtual

Multiply the entire vector by a fixed factor.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 203 of file trilinos_epetra_vector.cc.

◆ operator/=()

Vector & Vector< Number >::operator/= ( const double  factor)
overridevirtual

Divide the entire vector by a fixed factor.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 214 of file trilinos_epetra_vector.cc.

◆ operator+=()

Vector & Vector< Number >::operator+= ( const VectorSpaceVector< double > &  V)
overridevirtual

Add the vector V to the present one.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 226 of file trilinos_epetra_vector.cc.

◆ operator-=()

Vector & Vector< Number >::operator-= ( const VectorSpaceVector< double > &  V)
overridevirtual

Subtract the vector V from the present one.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 278 of file trilinos_epetra_vector.cc.

◆ operator*()

double Vector< Number >::operator* ( const VectorSpaceVector< double > &  V) const
overridevirtual

Return the scalar product of two vectors. The vectors need to have the same layout.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 288 of file trilinos_epetra_vector.cc.

◆ add() [1/3]

void Vector< Number >::add ( const double  a)
overridevirtual

Add a to all components. Note that is a scalar not a vector.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 312 of file trilinos_epetra_vector.cc.

◆ add() [2/3]

void Vector< Number >::add ( const double  a,
const VectorSpaceVector< double > &  V 
)
overridevirtual

Simple addition of a multiple of a vector, i.e. *this += a*V. The vectors need to have the same layout.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 323 of file trilinos_epetra_vector.cc.

◆ add() [3/3]

void Vector< Number >::add ( const double  a,
const VectorSpaceVector< double > &  V,
const double  b,
const VectorSpaceVector< double > &  W 
)
overridevirtual

Multiple addition of multiple of a vector, i.e. *this> += a*V+b*W. The vectors need to have the same layout.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 343 of file trilinos_epetra_vector.cc.

◆ sadd()

void Vector< Number >::sadd ( const double  s,
const double  a,
const VectorSpaceVector< double > &  V 
)
overridevirtual

Scaling and simple addition of a multiple of a vector, i.e. this = s(*this)+a*V.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 375 of file trilinos_epetra_vector.cc.

◆ scale()

void Vector< Number >::scale ( const VectorSpaceVector< double > &  scaling_factors)
overridevirtual

Scale each element of this vector by the corresponding element in the argument. This function is mostly meant to simulate multiplication (and immediate re-assignment) by a diagonal scaling matrix. The vectors need to have the same layout.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 394 of file trilinos_epetra_vector.cc.

◆ equ()

void Vector< Number >::equ ( const double  a,
const VectorSpaceVector< double > &  V 
)
overridevirtual

Assignment *this = a*V.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 417 of file trilinos_epetra_vector.cc.

◆ all_zero()

bool Vector< Number >::all_zero ( ) const
overridevirtual

Return whether the vector contains only elements with value zero.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 440 of file trilinos_epetra_vector.cc.

◆ mean_value()

double Vector< Number >::mean_value ( ) const
overridevirtual

Return the mean value of the element of this vector.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 469 of file trilinos_epetra_vector.cc.

◆ l1_norm()

double Vector< Number >::l1_norm ( ) const
overridevirtual

Return the l1 norm of the vector (i.e., the sum of the absolute values of all entries among all processors).

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 483 of file trilinos_epetra_vector.cc.

◆ l2_norm()

double Vector< Number >::l2_norm ( ) const
overridevirtual

Return the l2 norm of the vector (i.e., the square root of the sum of the square of all entries among all processors).

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 496 of file trilinos_epetra_vector.cc.

◆ linfty_norm()

double Vector< Number >::linfty_norm ( ) const
overridevirtual

Return the maximum norm of the vector (i.e., the maximum absolute value among all entries and among all processors).

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 509 of file trilinos_epetra_vector.cc.

◆ add_and_dot()

double Vector< Number >::add_and_dot ( const double  a,
const VectorSpaceVector< double > &  V,
const VectorSpaceVector< double > &  W 
)
overridevirtual

Performs a combined operation of a vector addition and a subsequent inner product, returning the value of the inner product. In other words, the result of this function is the same as if the user called

this->add(a, V);
return_value = *this * W;
virtual void add(const double a) override
static const char V

The reason this function exists is that this operation involves less memory transfer than calling the two functions separately. This method only needs to load three vectors, this, V, W, whereas calling separate methods means to load the calling vector this twice. Since most vector operations are memory transfer limited, this reduces the time by 25% (or 50% if W equals this).

The vectors need to have the same layout.

For complex-valued vectors, the scalar product in the second step is implemented as \(\left<v,w\right>=\sum_i v_i \bar{w_i}\).

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 522 of file trilinos_epetra_vector.cc.

◆ has_ghost_elements()

bool Vector< Number >::has_ghost_elements ( ) const
inline

This function always returns false and is present only for backward compatibility.

Definition at line 394 of file trilinos_epetra_vector.h.

◆ size()

Vector::size_type Vector< Number >::size ( ) const
overridevirtual

Return the global size of the vector, equal to the sum of the number of locally owned indices among all processors.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 534 of file trilinos_epetra_vector.cc.

◆ locally_owned_size()

Vector::size_type Vector< Number >::locally_owned_size ( ) const

Return the local size of the vector, i.e., the number of indices owned locally.

Definition at line 546 of file trilinos_epetra_vector.cc.

◆ get_mpi_communicator()

MPI_Comm Vector< Number >::get_mpi_communicator ( ) const

Return the MPI communicator object in use with this object.

Definition at line 554 of file trilinos_epetra_vector.cc.

◆ locally_owned_elements()

IndexSet Vector< Number >::locally_owned_elements ( ) const
overridevirtual

Return an index set that describes which elements of this vector are owned by the current processor. As a consequence, the index sets returned on different processors if this is a distributed vector will form disjoint sets that add up to the complete index set. Obviously, if a vector is created on only one processor, then the result would satisfy

vec.locally_owned_elements() == complete_index_set(vec.size())
IndexSet complete_index_set(const IndexSet::size_type N)
Definition: index_set.h:1054

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 565 of file trilinos_epetra_vector.cc.

◆ trilinos_vector() [1/2]

const Epetra_FEVector & Vector< Number >::trilinos_vector ( ) const

Return a const reference to the underlying Trilinos Epetra_FEVector class.

Definition at line 599 of file trilinos_epetra_vector.cc.

◆ trilinos_vector() [2/2]

Epetra_FEVector & Vector< Number >::trilinos_vector ( )

Return a (modifiable) reference to the underlying Trilinos Epetra_FEVector class.

Definition at line 607 of file trilinos_epetra_vector.cc.

◆ print()

void Vector< Number >::print ( std::ostream &  out,
const unsigned int  precision = 3,
const bool  scientific = true,
const bool  across = true 
) const
overridevirtual

Prints the vector to the output stream out.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 615 of file trilinos_epetra_vector.cc.

◆ memory_consumption()

std::size_t Vector< Number >::memory_consumption ( ) const
overridevirtual

Return the memory consumption of this class in bytes.

Implements LinearAlgebra::VectorSpaceVector< double >.

Definition at line 653 of file trilinos_epetra_vector.cc.

◆ create_epetra_comm_pattern()

void Vector< Number >::create_epetra_comm_pattern ( const IndexSet source_index_set,
const MPI_Comm &  mpi_comm 
)
private

Create the CommunicationPattern for the communication between the IndexSet source_index_set and the current vector based on the communicator mpi_comm.

Definition at line 663 of file trilinos_epetra_vector.cc.

◆ compress()

virtual void LinearAlgebra::VectorSpaceVector< double >::compress ( VectorOperation::values  )
inlinevirtualinherited

This function does nothing and only exists for backward compatibility.

Definition at line 227 of file vector_space_vector.h.

◆ subscribe()

void Subscriptor::subscribe ( std::atomic< bool > *const  validity,
const std::string &  identifier = "" 
) const
inherited

Subscribes a user of the object by storing the pointer validity. The subscriber may be identified by text supplied as identifier.

Definition at line 136 of file subscriptor.cc.

◆ unsubscribe()

void Subscriptor::unsubscribe ( std::atomic< bool > *const  validity,
const std::string &  identifier = "" 
) const
inherited

Unsubscribes a user from the object.

Note
The identifier and the validity pointer must be the same as the one supplied to subscribe().

Definition at line 156 of file subscriptor.cc.

◆ n_subscriptions()

unsigned int Subscriptor::n_subscriptions ( ) const
inlineinherited

Return the present number of subscriptions to this object. This allows to use this class for reference counted lifetime determination where the last one to unsubscribe also deletes the object.

Definition at line 300 of file subscriptor.h.

◆ list_subscribers() [1/2]

template<typename StreamType >
void Subscriptor::list_subscribers ( StreamType &  stream) const
inlineinherited

List the subscribers to the input stream.

Definition at line 317 of file subscriptor.h.

◆ list_subscribers() [2/2]

void Subscriptor::list_subscribers ( ) const
inherited

List the subscribers to deallog.

Definition at line 204 of file subscriptor.cc.

◆ serialize()

template<class Archive >
void Subscriptor::serialize ( Archive &  ar,
const unsigned int  version 
)
inlineinherited

Read or write the data of this object to or from a stream for the purpose of serialization using the BOOST serialization library.

This function does not actually serialize any of the member variables of this class. The reason is that what this class stores is only who subscribes to this object, but who does so at the time of storing the contents of this object does not necessarily have anything to do with who subscribes to the object when it is restored. Consequently, we do not want to overwrite the subscribers at the time of restoring, and then there is no reason to write the subscribers out in the first place.

Definition at line 309 of file subscriptor.h.

◆ check_no_subscribers()

void Subscriptor::check_no_subscribers ( ) const
privatenoexceptinherited

Check that there are no objects subscribing to this object. If this check passes then it is safe to destroy the current object. It this check fails then this function will either abort or print an error message to deallog (by using the AssertNothrow mechanism), but will not throw an exception.

Note
Since this function is just a consistency check it does nothing in release mode.
If this function is called when there is an uncaught exception then, rather than aborting, this function prints an error message to the standard error stream and returns.

Definition at line 53 of file subscriptor.cc.

Member Data Documentation

◆ vector

std::unique_ptr<Epetra_FEVector> LinearAlgebra::EpetraWrappers::Vector::vector
private

Pointer to the actual Epetra vector object.

Definition at line 378 of file trilinos_epetra_vector.h.

◆ source_stored_elements

::IndexSet LinearAlgebra::EpetraWrappers::Vector::source_stored_elements
private

IndexSet of the elements of the last imported vector.

Definition at line 383 of file trilinos_epetra_vector.h.

◆ epetra_comm_pattern

std::shared_ptr<const CommunicationPattern> LinearAlgebra::EpetraWrappers::Vector::epetra_comm_pattern
private

CommunicationPattern for the communication between the source_stored_elements IndexSet and the current vector.

Definition at line 389 of file trilinos_epetra_vector.h.

◆ counter

std::atomic<unsigned int> Subscriptor::counter
mutableprivateinherited

Store the number of objects which subscribed to this object. Initially, this number is zero, and upon destruction it shall be zero again (i.e. all objects which subscribed should have unsubscribed again).

The creator (and owner) of an object is counted in the map below if HE manages to supply identification.

We use the mutable keyword in order to allow subscription to constant objects also.

This counter may be read from and written to concurrently in multithreaded code: hence we use the std::atomic class template.

Definition at line 219 of file subscriptor.h.

◆ counter_map

std::map<std::string, unsigned int> Subscriptor::counter_map
mutableprivateinherited

In this map, we count subscriptions for each different identification string supplied to subscribe().

Definition at line 225 of file subscriptor.h.

◆ validity_pointers

std::vector<std::atomic<bool> *> Subscriptor::validity_pointers
mutableprivateinherited

In this vector, we store pointers to the validity bool in the SmartPointer objects that subscribe to this class.

Definition at line 241 of file subscriptor.h.

◆ object_info

const std::type_info* Subscriptor::object_info
mutableprivateinherited

Pointer to the typeinfo object of this object, from which we can later deduce the class name. Since this information on the derived class is neither available in the destructor, nor in the constructor, we obtain it in between and store it here.

Definition at line 249 of file subscriptor.h.

◆ mutex

std::mutex Subscriptor::mutex
staticprivateinherited

A mutex used to ensure data consistency when printing out the list of subscribers.

Definition at line 271 of file subscriptor.h.


The documentation for this class was generated from the following files: