14#ifndef dealii_aligned_vector_h
15#define dealii_aligned_vector_h
27#include <boost/version.hpp>
28#if BOOST_VERSION >= 106400
29# include <boost/serialization/array_wrapper.hpp>
31# include <boost/serialization/array.hpp>
33#include <boost/serialization/binary_object.hpp>
34#include <boost/serialization/split_member.hpp>
89 typename RandomAccessIterator,
90 typename = std::enable_if_t<std::is_convertible_v<
91 typename std::iterator_traits<RandomAccessIterator>::iterator_category,
92 std::random_access_iterator_tag>>>
250 template <
typename ForwardIterator>
263 typename RandomAccessIterator,
264 typename = std::enable_if_t<std::is_convertible_v<
265 typename std::iterator_traits<RandomAccessIterator>::iterator_category,
266 std::random_access_iterator_tag>>>
269 RandomAccessIterator
begin,
270 RandomAccessIterator
end);
384 const unsigned int root_process);
472 template <
class Archive>
474 save(Archive &ar,
const unsigned int version)
const;
481 template <
class Archive>
483 load(Archive &ar,
const unsigned int version);
491 template <
class Archive>
493 serialize(Archive &archive,
const unsigned int version);
497 BOOST_SERIALIZATION_SPLIT_MEMBER()
507 "Changing the vector after a call to "
508 "replicate_across_communicator() is not allowed.");
517 const std::size_t new_size,
518 const std::size_t new_allocated_size);
621#ifdef DEAL_II_WITH_MPI
630 const bool is_shmem_root,
631 T *aligned_shmem_pointer,
633 MPI_Win shmem_window);
675#ifdef DEAL_II_WITH_MPI
775 template <
typename RandomAccessIterator,
typename T>
780 160000 /
sizeof(T) + 1;
793 RandomAccessIterator source_end,
794 T *
const destination)
799 Assert(source_end == source_begin || destination !=
nullptr,
801 const std::size_t
size = source_end - source_begin;
814 const std::size_t
end)
const override
820 if constexpr (std::is_trivially_copyable_v<T> ==
true &&
821 (std::is_same_v<T *, RandomAccessIterator> ||
822 std::is_same_v<const T *, RandomAccessIterator>) ==
true)
827 for (std::size_t i =
begin; i <
end; ++i)
843 template <
typename RandomAccessIterator,
typename T>
848 160000 /
sizeof(T) + 1;
861 RandomAccessIterator source_end,
862 T *
const destination)
867 Assert(source_end == source_begin || destination !=
nullptr,
869 const std::size_t
size = source_end - source_begin;
882 const std::size_t
end)
const override
888 if constexpr (std::is_trivially_copyable_v<T> ==
true &&
889 (std::is_same_v<T *, RandomAccessIterator> ||
890 std::is_same_v<const T *, RandomAccessIterator>) ==
true)
897 for (std::size_t i =
begin; i <
end; ++i)
924 template <
typename T,
bool initialize_memory>
928 160000 /
sizeof(T) + 1;
937 T *
const destination)
949 if constexpr (std::is_trivially_default_constructible_v<T> ==
true &&
950 std::is_same_v<T, long double> ==
false)
952 const unsigned char zero[
sizeof(T)] = {};
953 if (std::memcmp(zero, &element,
sizeof(T)) == 0)
967 const std::size_t
end)
const override
971 if constexpr (std::is_trivially_default_constructible_v<T> ==
true)
980 std::bool_constant<initialize_memory>());
991 const std::size_t
end,
992 std::bool_constant<false>)
const
994 for (std::size_t i =
begin; i <
end; ++i)
1001 const std::size_t
end,
1002 std::bool_constant<true>)
const
1004 for (std::size_t i =
begin; i <
end; ++i)
1023 template <
typename T,
bool initialize_memory>
1028 160000 /
sizeof(T) + 1;
1053 const std::size_t
end)
const override
1057 if constexpr (std::is_trivially_default_constructible_v<T> ==
true)
1062 std::bool_constant<initialize_memory>());
1071 const std::size_t
end,
1072 std::bool_constant<false>)
const
1074 for (std::size_t i =
begin; i <
end; ++i)
1081 const std::size_t
end,
1082 std::bool_constant<true>)
const
1084 for (std::size_t i =
begin; i <
end; ++i)
1096template <
typename T>
1098 : deleter_action_object(nullptr)
1099 , owning_aligned_vector(owning_object)
1103# ifdef DEAL_II_WITH_MPI
1105template <
typename T>
1107 const bool is_shmem_root,
1108 T *aligned_shmem_pointer,
1110 MPI_Win shmem_window)
1111 : deleter_action_object(
1112 std::make_unique<MPISharedMemDeleterAction>(is_shmem_root,
1113 aligned_shmem_pointer,
1114 shmem_group_communicator,
1116 , owning_aligned_vector(owning_object)
1121template <
typename T>
1127 if (deleter_action_object ==
nullptr)
1131 Assert(owning_aligned_vector->used_elements_end !=
nullptr,
1134 if (std::is_trivially_destructible_v<T> ==
false)
1135 for (T *p = owning_aligned_vector->used_elements_end - 1; p >= ptr;
1144 deleter_action_object->delete_array(owning_aligned_vector, ptr);
1149template <
typename T>
1154 owning_aligned_vector = new_aligned_vector_ptr;
1158# ifdef DEAL_II_WITH_MPI
1160template <
typename T>
1163 T *aligned_shmem_pointer,
1165 MPI_Win shmem_window)
1166 : is_shmem_root(is_shmem_root)
1167 , aligned_shmem_pointer(aligned_shmem_pointer)
1168 , shmem_group_communicator(shmem_group_communicator)
1169 , shmem_window(shmem_window)
1174template <
typename T>
1191 if (std::is_trivially_destructible_v<T> ==
false)
1196 ierr = MPI_Win_free(&shmem_window);
1207 : elements(nullptr, Deleter(this))
1208 , used_elements_end(nullptr)
1209 , allocated_elements_end(nullptr)
1210 , replicated_across_communicator(false)
1216template <
typename RandomAccessIterator,
typename>
1218 RandomAccessIterator
end)
1219 : elements(nullptr, Deleter(this))
1220 , used_elements_end(nullptr)
1221 , allocated_elements_end(nullptr)
1222 , replicated_across_communicator(false)
1225 used_elements_end = allocated_elements_end;
1234 : elements(nullptr, Deleter(this))
1235 , used_elements_end(nullptr)
1236 , allocated_elements_end(nullptr)
1237 , replicated_across_communicator(false)
1247 : elements(nullptr, Deleter(this))
1248 , used_elements_end(nullptr)
1249 , allocated_elements_end(nullptr)
1250 , replicated_across_communicator(false)
1254 used_elements_end = allocated_elements_end;
1267 *
this = std::move(vec);
1290 used_elements_end = elements.get() + new_size;
1309 elements = std::move(vec.
elements);
1310 elements.get_deleter().reset_owning_object(
this);
1332 else if (new_size == old_size)
1335 else if (new_size < old_size)
1340 if (std::is_trivially_destructible_v<T> ==
false)
1341 for (T *p = used_elements_end - 1; p >= elements.get() + new_size; --p)
1343 used_elements_end = elements.get() + new_size;
1349 used_elements_end = elements.get() + new_size;
1353 if (std::is_trivially_default_constructible_v<T> ==
false)
1355 new_size - old_size, elements.get() + old_size);
1369 else if (new_size == old_size)
1372 else if (new_size < old_size)
1377 if (std::is_trivially_destructible_v<T> ==
false)
1378 for (T *p = used_elements_end - 1; p >= elements.get() + new_size; --p)
1380 used_elements_end = elements.get() + new_size;
1386 used_elements_end = elements.get() + new_size;
1390 new_size - old_size, elements.get() + old_size);
1404 else if (new_size == old_size)
1407 else if (new_size < old_size)
1412 if (std::is_trivially_destructible_v<T> ==
false)
1413 for (T *p = used_elements_end - 1; p >= elements.get() + new_size; --p)
1415 used_elements_end = elements.get() + new_size;
1421 used_elements_end = elements.get() + new_size;
1425 new_size - old_size, init, elements.get() + old_size);
1434 const std::size_t new_size,
1435 const std::size_t new_allocated_size)
1442 new_size *
sizeof(T));
1449 Deleter deleter(
this);
1452 if (new_allocated_size > 0)
1454 elements.get(), elements.get() + old_size, new_data_ptr);
1465 elements =
decltype(elements)(new_data_ptr, std::move(deleter));
1466 used_elements_end = elements.get() + old_size;
1467 allocated_elements_end = elements.get() + new_size;
1476 const size_type old_size = used_elements_end - elements.get();
1477 const size_type old_allocated_size = allocated_elements_end - elements.get();
1478 if (new_allocated_size > old_allocated_size)
1484 std::max(new_allocated_size, 2 * old_allocated_size);
1486 allocate_and_move(old_size, new_size, new_allocated_size);
1488 else if (new_allocated_size == 0)
1503 Assert(replicated_across_communicator ==
false,
1504 ExcAlignedVectorChangeAfterReplication());
1506 const size_type used_size = used_elements_end - elements.get();
1507 const size_type allocated_size = allocated_elements_end - elements.get();
1508 if (allocated_size > used_size)
1509 allocate_and_move(used_size, used_size, used_size);
1526 used_elements_end =
nullptr;
1527 allocated_elements_end =
nullptr;
1537 if (used_elements_end == allocated_elements_end)
1539 new (used_elements_end++)
T(in_data);
1549 T *field = used_elements_end - 1;
1560 const T *field = used_elements_end - 1;
1567template <
typename ForwardIterator>
1574 new (used_elements_end)
T(*
begin);
1580template <
typename RandomAccessIterator,
typename>
1583 RandomAccessIterator
begin,
1584 RandomAccessIterator
end)
1586 Assert(replicated_across_communicator ==
false,
1587 ExcAlignedVectorChangeAfterReplication());
1589 ExcMessage(
"The position iterator is not valid."));
1590 const auto offset = position - this->
begin();
1594 const size_type new_size = old_size + range_size;
1595 if (range_size != 0)
1600 T *new_data_ptr =
nullptr;
1602 reinterpret_cast<void **
>(&new_data_ptr), 64, new_size *
sizeof(T));
1608 elements.get(), elements.get() + offset, new_data_ptr);
1610 temporary.begin(), temporary.end(), new_data_ptr + offset);
1612 elements.get() + offset,
1613 elements.get() + old_size,
1614 new_data_ptr + offset + range_size);
1616 Deleter deleter(
this);
1617 elements =
decltype(elements)(new_data_ptr, std::move(deleter));
1618 used_elements_end = elements.get() + new_size;
1619 allocated_elements_end = elements.get() + new_size;
1621 return this->
begin() + offset;
1650 const unsigned int root_process)
1652# ifdef DEAL_II_WITH_MPI
1673 used_elements_end =
nullptr;
1674 allocated_elements_end =
nullptr;
1698 MPI_Comm shmem_group_communicator_temp;
1699 int ierr = MPI_Comm_split_type(communicator,
1700 MPI_COMM_TYPE_SHARED,
1703 &shmem_group_communicator_temp);
1708 ierr = MPI_Comm_split(shmem_group_communicator_temp,
1711 &shmem_group_communicator);
1722 const bool is_shmem_root =
1756 const int ierr = MPI_Comm_split(communicator,
1758 (is_shmem_root ? 0 : 1),
1760 &shmem_roots_communicator);
1769 const unsigned int shmem_roots_root_rank = 0;
1770 const bool is_shmem_roots_root =
1772 shmem_roots_communicator) == shmem_roots_root_rank));
1779 if constexpr (Utilities::MPI::is_mpi_type<T>)
1794 shmem_roots_root_rank);
1795 if (is_shmem_roots_root ==
false)
1802 shmem_roots_root_rank,
1803 shmem_roots_communicator);
1819 shmem_roots_root_rank);
1823 shmem_roots_root_rank);
1859 MPI_Win shmem_window;
1861 const MPI_Aint align_by = 64;
1862 const MPI_Aint alloc_size =
1864 (
size() *
sizeof(T) + (align_by - 1)),
1871 ierr = MPI_Info_create(&mpi_info);
1873 ierr = MPI_Info_set(mpi_info,
1874 "mpi_minimum_memory_alignment",
1875 std::to_string(align_by).c_str());
1877 ierr = MPI_Win_allocate_shared((is_shmem_root ? alloc_size : 0),
1880 shmem_group_communicator,
1885 ierr = MPI_Info_free(&mpi_info);
1908 if (is_shmem_root ==
false)
1911 MPI_Aint alloc_size;
1912 const int ierr = MPI_Win_shared_query(
1913 shmem_window, MPI_PROC_NULL, &alloc_size, &disp_unit, &base_ptr);
1933 std::size_t available_space = alloc_size;
1934 void *base_ptr_backup = base_ptr;
1935 T *aligned_shmem_pointer =
static_cast<T *
>(
1936 std::align(align_by, new_size *
sizeof(T), base_ptr, available_space));
1966 aligned_shmem_pointer =
static_cast<T *
>(base_ptr_backup);
1974 if (std::is_trivially_copyable_v<T> ==
true)
1975 std::memcpy(aligned_shmem_pointer, elements.get(),
sizeof(T) *
size());
1977 for (std::size_t i = 0; i <
size(); ++i)
1978 new (&aligned_shmem_pointer[i])
T(std::move(elements[i]));
1983 const int ierr = MPI_Barrier(shmem_group_communicator);
2003 elements =
decltype(elements)(aligned_shmem_pointer,
2006 aligned_shmem_pointer,
2007 shmem_group_communicator,
2014 used_elements_end = elements.get() + new_size;
2015 allocated_elements_end = used_elements_end;
2022 replicated_across_communicator =
true;
2025 std::accumulate(packed_data.begin(), packed_data.end(),
int(0));
2046 elements.get_deleter().reset_owning_object(
this);
2047 vec.
elements.get_deleter().reset_owning_object(&vec);
2060 return used_elements_end == elements.get();
2069 return used_elements_end - elements.get();
2078 return allocated_elements_end - elements.get();
2088 return elements[
index];
2098 return elements[
index];
2103template <
typename T>
2107 return elements.get();
2112template <
typename T>
2116 return elements.get();
2125 return elements.get();
2134 return used_elements_end;
2143 return elements.get();
2152 return used_elements_end;
2158template <
class Archive>
2166 if constexpr (std::is_trivially_copyable_v<T>)
2167 ar &boost::serialization::make_binary_object(elements.get(),
2168 vec_size *
sizeof(
T));
2170 ar &boost::serialization::make_array(elements.get(), vec_size);
2177template <
class Archive>
2188 if constexpr (std::is_trivially_copyable_v<T>)
2189 ar &boost::serialization::make_binary_object(elements.get(),
2190 vec_size *
sizeof(
T));
2192 ar &boost::serialization::make_array(elements.get(), vec_size);
2203 for (
const T *t = elements.get(); t != used_elements_end; ++t)
2205 memory +=
sizeof(
T) * (allocated_elements_end - used_elements_end);
bool operator==(const AlignedVector< T > &lhs, const AlignedVector< T > &rhs)
virtual ~DeleterActionBase()=default
virtual void delete_array(const AlignedVector< T > *owning_aligned_vector, T *ptr)=0
MPI_Comm shmem_group_communicator
virtual void delete_array(const AlignedVector< T > *aligned_vector, T *ptr) override
MPISharedMemDeleterAction(const bool is_shmem_root, T *aligned_shmem_pointer, MPI_Comm shmem_group_communicator, MPI_Win shmem_window)
T * aligned_shmem_pointer
Deleter(AlignedVector< T > *owning_object, const bool is_shmem_root, T *aligned_shmem_pointer, MPI_Comm shmem_group_communicator, MPI_Win shmem_window)
Deleter(AlignedVector< T > *owning_object)
std::unique_ptr< DeleterActionBase > deleter_action_object
void reset_owning_object(const AlignedVector< T > *new_aligned_vector_ptr)
const AlignedVector< T > * owning_aligned_vector
void replicate_across_communicator(const MPI_Comm communicator, const unsigned int root_process)
size_type memory_consumption() const
void resize_fast(const size_type new_size)
std::unique_ptr< T[], Deleter > elements
reference operator[](const size_type index)
void fill(const T &element)
const_iterator end() const
void allocate_and_move(const std::size_t old_size, const std::size_t new_size, const std::size_t new_allocated_size)
AlignedVector(AlignedVector< T > &&vec) noexcept
void reserve(const size_type new_allocated_size)
void serialize(Archive &archive, const unsigned int version)
bool operator!=(const AlignedVector< T > &lhs, const AlignedVector< T > &rhs)
const_reference operator[](const size_type index) const
void resize(const size_type new_size, const T &init)
AlignedVector & operator=(AlignedVector< T > &&vec) noexcept
AlignedVector(RandomAccessIterator begin, RandomAccessIterator end)
size_type capacity() const
AlignedVector & operator=(const AlignedVector< T > &vec)
void swap(AlignedVector< T > &vec) noexcept
const value_type * const_pointer
bool replicated_across_communicator
void push_back(const T in_data)
iterator insert(const_iterator position, RandomAccessIterator begin, RandomAccessIterator end)
const_iterator begin() const
AlignedVector(const size_type size, const T &init=T())
T * allocated_elements_end
AlignedVector(const AlignedVector< T > &vec)
const_reference back() const
bool operator==(const AlignedVector< T > &lhs, const AlignedVector< T > &rhs)
const value_type * const_iterator
void resize(const size_type new_size)
void load(Archive &ar, const unsigned int version)
void save(Archive &ar, const unsigned int version) const
void insert_back(ForwardIterator begin, ForwardIterator end)
const value_type & const_reference
const_pointer data() const
AlignedVectorCopyConstruct(RandomAccessIterator source_begin, RandomAccessIterator source_end, T *const destination)
RandomAccessIterator source_
static const std::size_t minimum_parallel_grain_size
virtual void apply_to_subrange(const std::size_t begin, const std::size_t end) const override
AlignedVectorDefaultInitialize(const std::size_t size, T *const destination)
static const std::size_t minimum_parallel_grain_size
virtual void apply_to_subrange(const std::size_t begin, const std::size_t end) const override
void default_construct_or_assign(const std::size_t begin, const std::size_t end, std::bool_constant< false >) const
void default_construct_or_assign(const std::size_t begin, const std::size_t end, std::bool_constant< true >) const
void copy_construct_or_assign(const std::size_t begin, const std::size_t end, std::bool_constant< false >) const
static const std::size_t minimum_parallel_grain_size
virtual void apply_to_subrange(const std::size_t begin, const std::size_t end) const override
void copy_construct_or_assign(const std::size_t begin, const std::size_t end, std::bool_constant< true >) const
AlignedVectorInitialize(const std::size_t size, const T &element, T *const destination)
RandomAccessIterator source_
AlignedVectorMoveConstruct(RandomAccessIterator source_begin, RandomAccessIterator source_end, T *const destination)
virtual void apply_to_subrange(const std::size_t begin, const std::size_t end) const override
static const std::size_t minimum_parallel_grain_size
#define DEAL_II_NAMESPACE_OPEN
constexpr bool running_in_debug_mode()
#define DEAL_II_NAMESPACE_CLOSE
#define Assert(cond, exc)
#define AssertThrowMPI(error_code)
#define AssertIndexRange(index, range)
#define DeclExceptionMsg(Exception, defaulttext)
static ::ExceptionBase & ExcInternalError()
static ::ExceptionBase & ExcMessage(std::string arg1)
static ::ExceptionBase & ExcAlignedVectorChangeAfterReplication()
std::vector< index_type > data
types::global_dof_index size_type
std::enable_if_t< std::is_fundamental_v< T >, std::size_t > memory_consumption(const T &t)
* state_parameters reserve(get_material_parameter_count())
T max(const T &t, const MPI_Comm mpi_communicator)
T min(const T &t, const MPI_Comm mpi_communicator)
unsigned int this_mpi_process(const MPI_Comm mpi_communicator)
void free_communicator(MPI_Comm mpi_communicator)
T broadcast(const MPI_Comm comm, const T &object_to_send, const unsigned int root_process=0)
void posix_memalign(void **memptr, std::size_t alignment, std::size_t size)
std::size_t pack(const T &object, std::vector< char > &dest_buffer, const bool allow_compression=true)
::VectorizedArray< Number, width > max(const ::VectorizedArray< Number, width > &, const ::VectorizedArray< Number, width > &)
void apply_parallel(const std::size_t begin, const std::size_t end, const std::size_t minimum_parallel_grain_size) const