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Reference documentation for deal.II version 9.6.0
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#include <deal.II/lac/trilinos_precondition.h>
Classes | |
struct | AdditionalData |
Public Types | |
using | size_type = ::types::global_dof_index |
Public Member Functions | |
void | initialize (const SparseMatrix &matrix, const AdditionalData &additional_data=AdditionalData()) |
void | clear () |
MPI_Comm | get_mpi_communicator () const |
void | transpose () |
virtual void | vmult (MPI::Vector &dst, const MPI::Vector &src) const |
virtual void | vmult (::Vector< double > &dst, const ::Vector< double > &src) const |
virtual void | vmult (::LinearAlgebra::distributed::Vector< double > &dst, const ::LinearAlgebra::distributed::Vector< double > &src) const |
virtual void | Tvmult (MPI::Vector &dst, const MPI::Vector &src) const |
virtual void | Tvmult (::Vector< double > &dst, const ::Vector< double > &src) const |
virtual void | Tvmult (::LinearAlgebra::distributed::Vector< double > &dst, const ::LinearAlgebra::distributed::Vector< double > &src) const |
template<class Archive > | |
void | serialize (Archive &ar, const unsigned int version) |
Access to underlying Trilinos data | |
Epetra_Operator & | trilinos_operator () const |
Partitioners | |
IndexSet | locally_owned_domain_indices () const |
IndexSet | locally_owned_range_indices () const |
Subscriptor functionality | |
Classes derived from Subscriptor provide a facility to subscribe to this object. This is mostly used by the SmartPointer class. | |
void | subscribe (std::atomic< bool > *const validity, const std::string &identifier="") const |
void | unsubscribe (std::atomic< bool > *const validity, const std::string &identifier="") const |
unsigned int | n_subscriptions () const |
template<typename StreamType > | |
void | list_subscribers (StreamType &stream) const |
void | list_subscribers () const |
Static Public Member Functions | |
static ::ExceptionBase & | ExcNonMatchingMaps (std::string arg1) |
static ::ExceptionBase & | ExcInUse (int arg1, std::string arg2, std::string arg3) |
static ::ExceptionBase & | ExcNoSubscriber (std::string arg1, std::string arg2) |
Protected Attributes | |
Teuchos::RCP< Epetra_Operator > | preconditioner |
Epetra_MpiComm | communicator |
Private Types | |
using | map_value_type = decltype(counter_map)::value_type |
using | map_iterator = decltype(counter_map)::iterator |
Private Member Functions | |
void | check_no_subscribers () const noexcept |
Private Attributes | |
std::atomic< unsigned int > | counter |
std::map< std::string, unsigned int > | counter_map |
std::vector< std::atomic< bool > * > | validity_pointers |
const std::type_info * | object_info |
Static Private Attributes | |
static std::mutex | mutex |
A wrapper class for an incomplete Cholesky factorization (IC) preconditioner for symmetric Trilinos matrices. This preconditioner works both in serial and in parallel, depending on the matrix it is based on. In general, an incomplete factorization does not take all fill-in elements that would appear in a full factorization (that is the basis for a direct solve). Trilinos allows to set the amount of fill-in elements, governed by the additional data argument ic_fill
, so one can gradually choose between a factorization on the sparse matrix structure only (ic_fill=0
) to a full factorization (ic_fill
in the range of 10 to 50, depending on the spatial dimension of the PDE problem and the degree of the finite element basis functions; generally, more required fill-in elements require this parameter to be set to a higher integer value).
The AdditionalData data structure allows to set preconditioner options. Besides the fill-in argument, these options are some options for perturbations (see the documentation of the AdditionalData structure for details), and a parameter overlap
that determines if and how much overlap there should be between the matrix partitions on the various MPI processes. The default settings are 0 for the additional fill-in, 0 for the absolute augmentation tolerance, 1 for the relative augmentation tolerance, 0 for the overlap.
Note that a parallel application of the IC preconditioner is actually a block-Jacobi preconditioner with block size equal to the local matrix size. Spoken more technically, this parallel operation is an additive Schwarz method with an IC approximate solve as inner solver, based on the (outer) parallel partitioning.
Definition at line 841 of file trilinos_precondition.h.
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inherited |
Declare the type for container size.
Definition at line 82 of file trilinos_precondition.h.
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privateinherited |
The data type used in counter_map.
Definition at line 229 of file subscriptor.h.
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privateinherited |
The iterator type used in counter_map.
Definition at line 234 of file subscriptor.h.
void TrilinosWrappers::PreconditionIC::initialize | ( | const SparseMatrix & | matrix, |
const AdditionalData & | additional_data = AdditionalData() ) |
Initialize function. Takes the matrix the preconditioner should be computed of, and additional flags if there are any.
Definition at line 453 of file trilinos_precondition.cc.
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inherited |
Destroys the preconditioner, leaving an object like just after having called the constructor.
Definition at line 39 of file trilinos_precondition.cc.
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inherited |
Return the underlying MPI communicator.
Definition at line 47 of file trilinos_precondition.cc.
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inherited |
Sets an internal flag so that all operations performed by the matrix, i.e., multiplications, are done in transposed order. However, this does not reshape the matrix to transposed form directly, so care should be taken when using this flag.
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virtualinherited |
Apply the preconditioner.
Reimplemented in TrilinosWrappers::PreconditionIdentity.
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virtualinherited |
Apply the preconditioner on deal.II data structures instead of the ones provided in the Trilinos wrapper class.
Reimplemented in TrilinosWrappers::PreconditionIdentity.
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virtualinherited |
Apply the preconditioner on deal.II parallel data structures instead of the ones provided in the Trilinos wrapper class.
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virtualinherited |
Apply the transpose preconditioner.
Reimplemented in TrilinosWrappers::PreconditionIdentity.
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virtualinherited |
Apply the transpose preconditioner on deal.II data structures instead of the ones provided in the Trilinos wrapper class.
Reimplemented in TrilinosWrappers::PreconditionIdentity.
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virtualinherited |
Apply the transpose preconditioner on deal.II parallel data structures instead of the ones provided in the Trilinos wrapper class.
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inherited |
Calling this function from an uninitialized object will cause an exception.
Definition at line 54 of file trilinos_precondition.cc.
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inherited |
Return the partitioning of the domain space of this matrix, i.e., the partitioning of the vectors this matrix has to be multiplied with.
Definition at line 63 of file trilinos_precondition.cc.
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inherited |
Return the partitioning of the range space of this matrix, i.e., the partitioning of the vectors that are result from matrix-vector products.
Definition at line 70 of file trilinos_precondition.cc.
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inherited |
Subscribes a user of the object by storing the pointer validity
. The subscriber may be identified by text supplied as identifier
.
Definition at line 135 of file subscriptor.cc.
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inherited |
Unsubscribes a user from the object.
identifier
and the validity
pointer must be the same as the one supplied to subscribe(). Definition at line 155 of file subscriptor.cc.
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inlineinherited |
Return the present number of subscriptions to this object. This allows to use this class for reference counted lifetime determination where the last one to unsubscribe also deletes the object.
Definition at line 300 of file subscriptor.h.
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inlineinherited |
List the subscribers to the input stream
.
Definition at line 317 of file subscriptor.h.
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inherited |
List the subscribers to deallog
.
Definition at line 203 of file subscriptor.cc.
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inlineinherited |
Read or write the data of this object to or from a stream for the purpose of serialization using the BOOST serialization library.
This function does not actually serialize any of the member variables of this class. The reason is that what this class stores is only who subscribes to this object, but who does so at the time of storing the contents of this object does not necessarily have anything to do with who subscribes to the object when it is restored. Consequently, we do not want to overwrite the subscribers at the time of restoring, and then there is no reason to write the subscribers out in the first place.
Definition at line 309 of file subscriptor.h.
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privatenoexceptinherited |
Check that there are no objects subscribing to this object. If this check passes then it is safe to destroy the current object. It this check fails then this function will either abort or print an error message to deallog (by using the AssertNothrow mechanism), but will not throw an exception.
Definition at line 52 of file subscriptor.cc.
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protectedinherited |
This is a pointer to the preconditioner object that is used when applying the preconditioner.
Definition at line 222 of file trilinos_precondition.h.
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protectedinherited |
Internal communication pattern in case the matrix needs to be copied from deal.II format.
Definition at line 228 of file trilinos_precondition.h.
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mutableprivateinherited |
Store the number of objects which subscribed to this object. Initially, this number is zero, and upon destruction it shall be zero again (i.e. all objects which subscribed should have unsubscribed again).
The creator (and owner) of an object is counted in the map below if HE manages to supply identification.
We use the mutable
keyword in order to allow subscription to constant objects also.
This counter may be read from and written to concurrently in multithreaded code: hence we use the std::atomic
class template.
Definition at line 218 of file subscriptor.h.
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mutableprivateinherited |
In this map, we count subscriptions for each different identification string supplied to subscribe().
Definition at line 224 of file subscriptor.h.
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mutableprivateinherited |
In this vector, we store pointers to the validity bool in the SmartPointer objects that subscribe to this class.
Definition at line 240 of file subscriptor.h.
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mutableprivateinherited |
Pointer to the typeinfo object of this object, from which we can later deduce the class name. Since this information on the derived class is neither available in the destructor, nor in the constructor, we obtain it in between and store it here.
Definition at line 248 of file subscriptor.h.
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staticprivateinherited |
A mutex used to ensure data consistency when accessing the mutable
members of this class. This lock is used in the subscribe() and unsubscribe() functions, as well as in list_subscribers()
.
Definition at line 271 of file subscriptor.h.