Reference documentation for deal.II version GIT d8dacc551e 2022-08-19 06:50:03+00:00
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Classes | Public Types | Public Member Functions | Static Public Member Functions | Protected Attributes | Private Types | Private Member Functions | Private Attributes | Static Private Attributes | List of all members

#include <deal.II/lac/trilinos_precondition.h>

Inheritance diagram for TrilinosWrappers::PreconditionILU:
[legend]

Classes

struct  AdditionalData
 

Public Types

using size_type = ::types::global_dof_index
 

Public Member Functions

void initialize (const SparseMatrix &matrix, const AdditionalData &additional_data=AdditionalData())
 
void clear ()
 
MPI_Comm get_mpi_communicator () const
 
void transpose ()
 
virtual void vmult (MPI::Vector &dst, const MPI::Vector &src) const
 
virtual void vmult (::Vector< double > &dst, const ::Vector< double > &src) const
 
virtual void vmult (::LinearAlgebra::distributed::Vector< double > &dst, const ::LinearAlgebra::distributed::Vector< double > &src) const
 
virtual void Tvmult (MPI::Vector &dst, const MPI::Vector &src) const
 
virtual void Tvmult (::Vector< double > &dst, const ::Vector< double > &src) const
 
virtual void Tvmult (::LinearAlgebra::distributed::Vector< double > &dst, const ::LinearAlgebra::distributed::Vector< double > &src) const
 
template<class Archive >
void serialize (Archive &ar, const unsigned int version)
 
Access to underlying Trilinos data
Epetra_Operatortrilinos_operator () const
 
Partitioners
IndexSet locally_owned_domain_indices () const
 
IndexSet locally_owned_range_indices () const
 
Subscriptor functionality

Classes derived from Subscriptor provide a facility to subscribe to this object. This is mostly used by the SmartPointer class.

void subscribe (std::atomic< bool > *const validity, const std::string &identifier="") const
 
void unsubscribe (std::atomic< bool > *const validity, const std::string &identifier="") const
 
unsigned int n_subscriptions () const
 
template<typename StreamType >
void list_subscribers (StreamType &stream) const
 
void list_subscribers () const
 

Static Public Member Functions

static ::ExceptionBaseExcNonMatchingMaps (std::string arg1)
 
static ::ExceptionBaseExcInUse (int arg1, std::string arg2, std::string arg3)
 
static ::ExceptionBaseExcNoSubscriber (std::string arg1, std::string arg2)
 

Protected Attributes

Teuchos::RCP< Epetra_Operatorpreconditioner
 
Epetra_MpiComm communicator
 
std::shared_ptr< Epetra_Map > vector_distributor
 

Private Types

using map_value_type = decltype(counter_map)::value_type
 
using map_iterator = decltype(counter_map)::iterator
 

Private Member Functions

void check_no_subscribers () const noexcept
 

Private Attributes

std::atomic< unsigned int > counter
 
std::map< std::string, unsigned int > counter_map
 
std::vector< std::atomic< bool > * > validity_pointers
 
const std::type_info * object_info
 

Static Private Attributes

static std::mutex mutex
 

Detailed Description

A wrapper class for an incomplete LU factorization (ILU(k)) preconditioner for Trilinos matrices. This preconditioner works both in serial and in parallel, depending on the matrix it is based on. In general, an incomplete factorization does not take all fill-in elements that would appear in a full factorization (that is the basis for a direct solve). Trilinos allows to set the amount of fill-in elements, governed by the additional data argument ilu_fill, so one can gradually choose between a factorization on the sparse matrix structure only (ilu_fill=0) to a full factorization (ilu_fill in the range of 10 to 50, depending on the spatial dimension of the PDE problem and the degree of the finite element basis functions; generally, more required fill-in elements require this parameter to be set to a higher integer value).

The AdditionalData data structure allows to set preconditioner options. See the documentation of the AdditionalData structure for details.

Note that a parallel application of the ILU preconditioner is actually a block-Jacobi preconditioner with block size equal to the local matrix size. Spoken more technically, this parallel operation is an additive Schwarz method with an ILU approximate solve as inner solver, based on the (outer) parallel partitioning.

Definition at line 962 of file trilinos_precondition.h.

Member Typedef Documentation

◆ size_type

Declare the type for container size.

Definition at line 83 of file trilinos_precondition.h.

◆ map_value_type

using Subscriptor::map_value_type = decltype(counter_map)::value_type
privateinherited

The data type used in counter_map.

Definition at line 230 of file subscriptor.h.

◆ map_iterator

using Subscriptor::map_iterator = decltype(counter_map)::iterator
privateinherited

The iterator type used in counter_map.

Definition at line 235 of file subscriptor.h.

Member Function Documentation

◆ initialize()

void TrilinosWrappers::PreconditionILU::initialize ( const SparseMatrix matrix,
const AdditionalData additional_data = AdditionalData() 
)

Initialize function. Takes the matrix which is used to form the preconditioner, and additional flags if there are any.

Definition at line 515 of file trilinos_precondition.cc.

◆ clear()

void TrilinosWrappers::PreconditionBase::clear ( )
inherited

Destroys the preconditioner, leaving an object like just after having called the constructor.

Definition at line 50 of file trilinos_precondition.cc.

◆ get_mpi_communicator()

MPI_Comm TrilinosWrappers::PreconditionBase::get_mpi_communicator ( ) const
inherited

Return the MPI communicator object in use with this matrix.

Definition at line 59 of file trilinos_precondition.cc.

◆ transpose()

void TrilinosWrappers::PreconditionBase::transpose ( )
inherited

Sets an internal flag so that all operations performed by the matrix, i.e., multiplications, are done in transposed order. However, this does not reshape the matrix to transposed form directly, so care should be taken when using this flag.

Note
Calling this function any even number of times in succession will return the object to its original state.

◆ vmult() [1/3]

virtual void TrilinosWrappers::PreconditionBase::vmult ( MPI::Vector dst,
const MPI::Vector src 
) const
virtualinherited

Apply the preconditioner.

Reimplemented in TrilinosWrappers::PreconditionIdentity.

◆ vmult() [2/3]

virtual void TrilinosWrappers::PreconditionBase::vmult ( ::Vector< double > &  dst,
const ::Vector< double > &  src 
) const
virtualinherited

Apply the preconditioner on deal.II data structures instead of the ones provided in the Trilinos wrapper class.

Reimplemented in TrilinosWrappers::PreconditionIdentity.

◆ vmult() [3/3]

virtual void TrilinosWrappers::PreconditionBase::vmult ( ::LinearAlgebra::distributed::Vector< double > &  dst,
const ::LinearAlgebra::distributed::Vector< double > &  src 
) const
virtualinherited

Apply the preconditioner on deal.II parallel data structures instead of the ones provided in the Trilinos wrapper class.

◆ Tvmult() [1/3]

virtual void TrilinosWrappers::PreconditionBase::Tvmult ( MPI::Vector dst,
const MPI::Vector src 
) const
virtualinherited

Apply the transpose preconditioner.

Reimplemented in TrilinosWrappers::PreconditionIdentity.

◆ Tvmult() [2/3]

virtual void TrilinosWrappers::PreconditionBase::Tvmult ( ::Vector< double > &  dst,
const ::Vector< double > &  src 
) const
virtualinherited

Apply the transpose preconditioner on deal.II data structures instead of the ones provided in the Trilinos wrapper class.

Reimplemented in TrilinosWrappers::PreconditionIdentity.

◆ Tvmult() [3/3]

virtual void TrilinosWrappers::PreconditionBase::Tvmult ( ::LinearAlgebra::distributed::Vector< double > &  dst,
const ::LinearAlgebra::distributed::Vector< double > &  src 
) const
virtualinherited

Apply the transpose preconditioner on deal.II parallel data structures instead of the ones provided in the Trilinos wrapper class.

◆ trilinos_operator()

Epetra_Operator & TrilinosWrappers::PreconditionBase::trilinos_operator ( ) const
inherited

Calling this function from an uninitialized object will cause an exception.

Definition at line 66 of file trilinos_precondition.cc.

◆ locally_owned_domain_indices()

IndexSet TrilinosWrappers::PreconditionBase::locally_owned_domain_indices ( ) const
inherited

Return the partitioning of the domain space of this matrix, i.e., the partitioning of the vectors this matrix has to be multiplied with.

Definition at line 75 of file trilinos_precondition.cc.

◆ locally_owned_range_indices()

IndexSet TrilinosWrappers::PreconditionBase::locally_owned_range_indices ( ) const
inherited

Return the partitioning of the range space of this matrix, i.e., the partitioning of the vectors that are result from matrix-vector products.

Definition at line 82 of file trilinos_precondition.cc.

◆ subscribe()

void Subscriptor::subscribe ( std::atomic< bool > *const  validity,
const std::string &  identifier = "" 
) const
inherited

Subscribes a user of the object by storing the pointer validity. The subscriber may be identified by text supplied as identifier.

Definition at line 136 of file subscriptor.cc.

◆ unsubscribe()

void Subscriptor::unsubscribe ( std::atomic< bool > *const  validity,
const std::string &  identifier = "" 
) const
inherited

Unsubscribes a user from the object.

Note
The identifier and the validity pointer must be the same as the one supplied to subscribe().

Definition at line 156 of file subscriptor.cc.

◆ n_subscriptions()

unsigned int Subscriptor::n_subscriptions ( ) const
inlineinherited

Return the present number of subscriptions to this object. This allows to use this class for reference counted lifetime determination where the last one to unsubscribe also deletes the object.

Definition at line 300 of file subscriptor.h.

◆ list_subscribers() [1/2]

template<typename StreamType >
void Subscriptor::list_subscribers ( StreamType &  stream) const
inlineinherited

List the subscribers to the input stream.

Definition at line 317 of file subscriptor.h.

◆ list_subscribers() [2/2]

void Subscriptor::list_subscribers ( ) const
inherited

List the subscribers to deallog.

Definition at line 204 of file subscriptor.cc.

◆ serialize()

template<class Archive >
void Subscriptor::serialize ( Archive &  ar,
const unsigned int  version 
)
inlineinherited

Read or write the data of this object to or from a stream for the purpose of serialization using the BOOST serialization library.

This function does not actually serialize any of the member variables of this class. The reason is that what this class stores is only who subscribes to this object, but who does so at the time of storing the contents of this object does not necessarily have anything to do with who subscribes to the object when it is restored. Consequently, we do not want to overwrite the subscribers at the time of restoring, and then there is no reason to write the subscribers out in the first place.

Definition at line 309 of file subscriptor.h.

◆ check_no_subscribers()

void Subscriptor::check_no_subscribers ( ) const
privatenoexceptinherited

Check that there are no objects subscribing to this object. If this check passes then it is safe to destroy the current object. It this check fails then this function will either abort or print an error message to deallog (by using the AssertNothrow mechanism), but will not throw an exception.

Note
Since this function is just a consistency check it does nothing in release mode.
If this function is called when there is an uncaught exception then, rather than aborting, this function prints an error message to the standard error stream and returns.

Definition at line 53 of file subscriptor.cc.

Member Data Documentation

◆ preconditioner

Teuchos::RCP<Epetra_Operator> TrilinosWrappers::PreconditionBase::preconditioner
protectedinherited

This is a pointer to the preconditioner object that is used when applying the preconditioner.

Definition at line 233 of file trilinos_precondition.h.

◆ communicator

Epetra_MpiComm TrilinosWrappers::PreconditionBase::communicator
protectedinherited

Internal communication pattern in case the matrix needs to be copied from deal.II format.

Definition at line 239 of file trilinos_precondition.h.

◆ vector_distributor

std::shared_ptr<Epetra_Map> TrilinosWrappers::PreconditionBase::vector_distributor
protectedinherited

Internal Trilinos map in case the matrix needs to be copied from deal.II format.

Definition at line 245 of file trilinos_precondition.h.

◆ counter

std::atomic<unsigned int> Subscriptor::counter
mutableprivateinherited

Store the number of objects which subscribed to this object. Initially, this number is zero, and upon destruction it shall be zero again (i.e. all objects which subscribed should have unsubscribed again).

The creator (and owner) of an object is counted in the map below if HE manages to supply identification.

We use the mutable keyword in order to allow subscription to constant objects also.

This counter may be read from and written to concurrently in multithreaded code: hence we use the std::atomic class template.

Definition at line 219 of file subscriptor.h.

◆ counter_map

std::map<std::string, unsigned int> Subscriptor::counter_map
mutableprivateinherited

In this map, we count subscriptions for each different identification string supplied to subscribe().

Definition at line 225 of file subscriptor.h.

◆ validity_pointers

std::vector<std::atomic<bool> *> Subscriptor::validity_pointers
mutableprivateinherited

In this vector, we store pointers to the validity bool in the SmartPointer objects that subscribe to this class.

Definition at line 241 of file subscriptor.h.

◆ object_info

const std::type_info* Subscriptor::object_info
mutableprivateinherited

Pointer to the typeinfo object of this object, from which we can later deduce the class name. Since this information on the derived class is neither available in the destructor, nor in the constructor, we obtain it in between and store it here.

Definition at line 249 of file subscriptor.h.

◆ mutex

std::mutex Subscriptor::mutex
staticprivateinherited

A mutex used to ensure data consistency when printing out the list of subscribers.

Definition at line 271 of file subscriptor.h.


The documentation for this class was generated from the following files: