#include <deal.II/lac/arpack_solver.h>

Inheritance diagram for ArpackSolver:

Classes
struct	AdditionalData

Public Types
enum	WhichEigenvalues { algebraically_largest , algebraically_smallest , largest_magnitude , smallest_magnitude , largest_real_part , smallest_real_part , largest_imaginary_part , smallest_imaginary_part , both_ends }

using	size_type = types::global_dof_index

Public Member Functions
SolverControl &	control () const

	ArpackSolver (SolverControl &control, const AdditionalData &data=AdditionalData())

template<typename VectorType >
void	set_initial_vector (const VectorType &vec)

void	set_shift (const std::complex< double > sigma)

template<typename VectorType , typename MatrixType1 , typename MatrixType2 , typename INVERSE >
void	solve (const MatrixType1 &A, const MatrixType2 &B, const INVERSE &inverse, std::vector< std::complex< double > > &eigenvalues, std::vector< VectorType > &eigenvectors, const unsigned int n_eigenvalues=0)

template<class Archive >
void	serialize (Archive &ar, const unsigned int version)

Subscriptor functionality
Classes derived from Subscriptor provide a facility to subscribe to this object. This is mostly used by the SmartPointer class.
void	subscribe (std::atomic< bool > *const validity, const std::string &identifier="") const

void	unsubscribe (std::atomic< bool > *const validity, const std::string &identifier="") const

unsigned int	n_subscriptions () const

template<typename StreamType >
void	list_subscribers (StreamType &stream) const

void	list_subscribers () const

Static Public Member Functions
static ::ExceptionBase &	ExcInUse (int arg1, std::string arg2, std::string arg3)

static ::ExceptionBase &	ExcNoSubscriber (std::string arg1, std::string arg2)

Protected Attributes
SolverControl &	solver_control

const AdditionalData	additional_data

bool	initial_vector_provided

std::vector< double >	resid

double	sigmar

double	sigmai

Private Types
using	map_value_type = decltype(counter_map)::value_type

using	map_iterator = decltype(counter_map)::iterator

Private Member Functions
void	check_no_subscribers () const noexcept

Static Private Member Functions
static ::ExceptionBase &	ArpackExcInvalidNumberofEigenvalues (int arg1, int arg2)

static ::ExceptionBase &	ArpackExcInvalidEigenvectorSize (int arg1, int arg2)

static ::ExceptionBase &	ArpackExcInvalidEigenvectorSizeNonsymmetric (int arg1, int arg2)

static ::ExceptionBase &	ArpackExcInvalidEigenvalueSize (int arg1, int arg2)

static ::ExceptionBase &	ArpackExcInvalidNumberofArnoldiVectors (int arg1, int arg2)

static ::ExceptionBase &	ArpackExcSmallNumberofArnoldiVectors (int arg1, int arg2)

static ::ExceptionBase &	ArpackExcArpackIdo (int arg1)

static ::ExceptionBase &	ArpackExcArpackMode (int arg1)

static ::ExceptionBase &	ArpackExcArpackInfodsaupd (int arg1)

static ::ExceptionBase &	ArpackExcArpackInfodnaupd (int arg1)

static ::ExceptionBase &	ArpackExcArpackInfodseupd (int arg1)

static ::ExceptionBase &	ArpackExcArpackInfodneupd (int arg1)

static ::ExceptionBase &	ArpackExcArpackInfoMaxIt (int arg1)

static ::ExceptionBase &	ArpackExcArpackNoShifts ()

Private Attributes
std::atomic< unsigned int >	counter

std::map< std::string, unsigned int >	counter_map

std::vector< std::atomic< bool > * >	validity_pointers

const std::type_info *	object_info

Static Private Attributes
static std::mutex	mutex

Detailed Description

Interface for using ARPACK. ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Here we interface to the routines dnaupd and dneupd of ARPACK. If the operator is specified to be symmetric we use the symmetric interface dsaupd and dseupd of ARPACK instead. The package is designed to compute a few eigenvalues and corresponding eigenvectors of a general n by n matrix A. It is most appropriate for large sparse matrices A.

In this class we make use of the method applied to the generalized eigenspectrum problem \((A-\lambda B)x=0\), for \(x\neq0\); where \(A\) is a system matrix, \(B\) is a mass matrix, and \(\lambda, x\) are a set of eigenvalues and eigenvectors respectively.

The ArpackSolver can be used in application codes with serial objects in the following way:

SolverControl solver_control(1000, 1e-9);
ArpackSolver solver(solver_control);
solver.solve(A, B, OP, lambda, x, size_of_spectrum);

for the generalized eigenvalue problem \(Ax=B\lambda x\), where the variable size_of_spectrum tells ARPACK the number of eigenvector/eigenvalue pairs to solve for. Here, lambda is a vector that will contain the eigenvalues computed, x a vector that will contain the eigenvectors computed, and OP is an inverse operation for the matrix A. Shift and invert transformation around zero is applied.

Through the AdditionalData the user can specify some of the parameters to be set.

For further information on how the ARPACK routines dsaupd, dseupd, dnaupd and dneupd work and also how to set the parameters appropriately please take a look into the ARPACK manual.

Note: Whenever you eliminate degrees of freedom using AffineConstraints, you generate spurious eigenvalues and eigenvectors. If you make sure that the diagonals of eliminated matrix rows are all equal to one, you get a single additional eigenvalue. But beware that some functions in deal.II set these diagonals to rather arbitrary (from the point of view of eigenvalue problems) values. See also step-36 for an example.

Definition at line 166 of file arpack_solver.h.

Member Typedef Documentation

◆ size_type

using ArpackSolver::size_type = types::global_dof_index

Declare the type for container size.

Definition at line 172 of file arpack_solver.h.

◆ map_value_type

using Subscriptor::map_value_type = decltype(counter_map)::value_type

privateinherited

The data type used in counter_map.

Definition at line 229 of file subscriptor.h.

◆ map_iterator

using Subscriptor::map_iterator = decltype(counter_map)::iterator

privateinherited

The iterator type used in counter_map.

Definition at line 234 of file subscriptor.h.

Member Enumeration Documentation

◆ WhichEigenvalues

enum ArpackSolver::WhichEigenvalues

An enum that lists the possible choices for which eigenvalues to compute in the solve() function.

Enumerator
algebraically_largest	The algebraically largest eigenvalues.
algebraically_smallest	The algebraically smallest eigenvalues.
largest_magnitude	The eigenvalue with the largest magnitudes.
smallest_magnitude	The eigenvalue with the smallest magnitudes.
largest_real_part	The eigenvalues with the largest real parts.
smallest_real_part	The eigenvalues with the smallest real parts.
largest_imaginary_part	The eigenvalues with the largest imaginary parts.
smallest_imaginary_part	The eigenvalues with the smallest imaginary parts.
both_ends	Compute half of the eigenvalues from the high end of the spectrum and the other half from the low end. If the number of requested eigenvectors is odd, then the extra eigenvector comes from the high end of the spectrum.

Definition at line 179 of file arpack_solver.h.

Constructor & Destructor Documentation

◆ ArpackSolver()

ArpackSolver::ArpackSolver	(	SolverControl &	control,
		const AdditionalData &	data = AdditionalData() )

inline

Constructor.

Definition at line 501 of file arpack_solver.h.

Member Function Documentation

◆ control()

SolverControl & ArpackSolver::control ( ) const

inline

Access to the object that controls convergence.

Definition at line 894 of file arpack_solver.h.

◆ set_initial_vector()

template<typename VectorType >

void ArpackSolver::set_initial_vector ( const VectorType & vec )

inline

Set initial vector for building Krylov space.

Definition at line 523 of file arpack_solver.h.

◆ set_shift()

void ArpackSolver::set_shift ( const std::complex< double > sigma )

inline

Set shift sigma for shift-and-invert spectral transformation.

If this function is not called, the shift is assumed to be zero.

Definition at line 513 of file arpack_solver.h.

◆ solve()

template<typename VectorType , typename MatrixType1 , typename MatrixType2 , typename INVERSE >

void ArpackSolver::solve	(	const MatrixType1 &	A,
		const MatrixType2 &	B,
		const INVERSE &	inverse,
		std::vector< std::complex< double > > &	eigenvalues,
		std::vector< VectorType > &	eigenvectors,
		const unsigned int	n_eigenvalues = 0 )

inline

Solve the generalized eigensprectrum problem \(A x=\lambda B x\) by calling the dsaupd and dseupd or dnaupd and dneupd functions of ARPACK.

The function returns a vector of eigenvalues of length n and a vector of eigenvectors of length n in the symmetric case and of length n+1 in the non-symmetric case. In the symmetric case all eigenvectors are real. In the non-symmetric case complex eigenvalues always occur as complex conjugate pairs. Therefore the eigenvector for an eigenvalue with nonzero complex part is stored by putting the real and the imaginary parts in consecutive real-valued vectors. The eigenvector of the complex conjugate eigenvalue does not need to be stored, since it is just the complex conjugate of the stored eigenvector. Thus, if the last n-th eigenvalue has a nonzero imaginary part, Arpack needs in total n+1 real-valued vectors to store real and imaginary parts of the eigenvectors.

Parameters

A	The operator for which we want to compute eigenvalues. Actually, this parameter is entirely unused.
B	The inner product of the underlying space, typically the mass matrix. For constrained problems, it can be a partial mass matrix, like for instance the velocity mass matrix of a Stokes problem. Only its function `vmult()` is used.
inverse	This is the possibly shifted inverse that is actually used instead of `A`. Only its function `vmult()` is used.
eigenvalues	is a vector of complex numbers in which the eigenvalues are returned.
eigenvectors	is a real vector of eigenvectors, containing the real parts of all eigenvectors and the imaginary parts of the eigenvectors corresponding to complex conjugate eigenvalue pairs. Therefore, its length should be n in the symmetric case and n+1 in the non-symmetric case. In the non-symmetric case the storage scheme leads for example to the following pattern. Suppose that the first two eigenvalues are real and the third and fourth are a complex conjugate pair. Asking for three eigenpairs results in [real(v1),real(v2), real(v3),imag(v3)]. Note that we get the same pattern if we ask for four eigenpairs in this example, since the fourth eigenvector is simply the complex conjugate of the third one.
n_eigenvalues	The purpose of this parameter is not clear, but it is safe to set it to the size of `eigenvalues` or greater. Leave it at its default zero, which will be reset to the size of `eigenvalues` internally.

Definition at line 537 of file arpack_solver.h.

◆ subscribe()

void Subscriptor::subscribe	(	std::atomic< bool > *const	validity,
		const std::string &	identifier = "" ) const

inherited

Subscribes a user of the object by storing the pointer validity. The subscriber may be identified by text supplied as identifier.

Definition at line 135 of file subscriptor.cc.

◆ unsubscribe()

void Subscriptor::unsubscribe	(	std::atomic< bool > *const	validity,
		const std::string &	identifier = "" ) const

inherited

Unsubscribes a user from the object.

Note: The identifier and the validity pointer must be the same as the one supplied to subscribe().

Definition at line 155 of file subscriptor.cc.

◆ n_subscriptions()

unsigned int Subscriptor::n_subscriptions ( ) const

inlineinherited

Return the present number of subscriptions to this object. This allows to use this class for reference counted lifetime determination where the last one to unsubscribe also deletes the object.

Definition at line 300 of file subscriptor.h.

◆ list_subscribers() [1/2]

template<typename StreamType >

void Subscriptor::list_subscribers ( StreamType & stream ) const

inlineinherited

List the subscribers to the input stream.

Definition at line 317 of file subscriptor.h.

◆ list_subscribers() [2/2]

void Subscriptor::list_subscribers ( ) const

inherited

List the subscribers to deallog.

Definition at line 203 of file subscriptor.cc.

◆ serialize()

template<class Archive >

void Subscriptor::serialize	(	Archive &	ar,
		const unsigned int	version )

inlineinherited

Read or write the data of this object to or from a stream for the purpose of serialization using the BOOST serialization library.

This function does not actually serialize any of the member variables of this class. The reason is that what this class stores is only who subscribes to this object, but who does so at the time of storing the contents of this object does not necessarily have anything to do with who subscribes to the object when it is restored. Consequently, we do not want to overwrite the subscribers at the time of restoring, and then there is no reason to write the subscribers out in the first place.

Definition at line 309 of file subscriptor.h.

◆ check_no_subscribers()

void Subscriptor::check_no_subscribers ( ) const

privatenoexceptinherited

Check that there are no objects subscribing to this object. If this check passes then it is safe to destroy the current object. It this check fails then this function will either abort or print an error message to deallog (by using the AssertNothrow mechanism), but will not throw an exception.

Note: Since this function is just a consistency check it does nothing in release mode.; If this function is called when there is an uncaught exception then, rather than aborting, this function prints an error message to the standard error stream and returns.

Definition at line 52 of file subscriptor.cc.

Member Data Documentation

◆ solver_control

SolverControl& ArpackSolver::solver_control

protected

Reference to the object that controls convergence of the iterative solver.

Definition at line 348 of file arpack_solver.h.

◆ additional_data

const AdditionalData ArpackSolver::additional_data

protected

Store a copy of the flags for this particular solver.

Definition at line 353 of file arpack_solver.h.

◆ initial_vector_provided

bool ArpackSolver::initial_vector_provided

protected

Store an initial vector

Definition at line 358 of file arpack_solver.h.

◆ resid

std::vector<double> ArpackSolver::resid

protected

Definition at line 359 of file arpack_solver.h.

◆ sigmar

double ArpackSolver::sigmar

protected

Real part of the shift

Definition at line 364 of file arpack_solver.h.

◆ sigmai

double ArpackSolver::sigmai

protected

Imaginary part of the shift

Definition at line 369 of file arpack_solver.h.

◆ counter

std::atomic<unsigned int> Subscriptor::counter

mutableprivateinherited

Store the number of objects which subscribed to this object. Initially, this number is zero, and upon destruction it shall be zero again (i.e. all objects which subscribed should have unsubscribed again).

The creator (and owner) of an object is counted in the map below if HE manages to supply identification.

We use the mutable keyword in order to allow subscription to constant objects also.

This counter may be read from and written to concurrently in multithreaded code: hence we use the std::atomic class template.

Definition at line 218 of file subscriptor.h.

◆ counter_map

std::map<std::string, unsigned int> Subscriptor::counter_map

mutableprivateinherited

In this map, we count subscriptions for each different identification string supplied to subscribe().

Definition at line 224 of file subscriptor.h.

◆ validity_pointers

std::vector<std::atomic<bool> *> Subscriptor::validity_pointers

mutableprivateinherited

In this vector, we store pointers to the validity bool in the SmartPointer objects that subscribe to this class.

Definition at line 240 of file subscriptor.h.

◆ object_info

const std::type_info* Subscriptor::object_info

mutableprivateinherited

Pointer to the typeinfo object of this object, from which we can later deduce the class name. Since this information on the derived class is neither available in the destructor, nor in the constructor, we obtain it in between and store it here.

Definition at line 248 of file subscriptor.h.

◆ mutex

std::mutex Subscriptor::mutex

staticprivateinherited

A mutex used to ensure data consistency when accessing the mutable members of this class. This lock is used in the subscribe() and unsubscribe() functions, as well as in list_subscribers().

Definition at line 271 of file subscriptor.h.

The documentation for this class was generated from the following file:

include/deal.II/lac/arpack_solver.h

Classes

Public Types

Public Member Functions

Static Public Member Functions

Protected Attributes

Private Types

Private Member Functions

Static Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

Member Typedef Documentation

◆ size_type

◆ map_value_type

◆ map_iterator

Member Enumeration Documentation

◆ WhichEigenvalues

Constructor & Destructor Documentation

◆ ArpackSolver()

Member Function Documentation

◆ control()

◆ set_initial_vector()

◆ set_shift()

◆ solve()

◆ subscribe()

◆ unsubscribe()

◆ n_subscriptions()

◆ list_subscribers() [1/2]

◆ list_subscribers() [2/2]

◆ serialize()

◆ check_no_subscribers()

Member Data Documentation

◆ solver_control

◆ additional_data

◆ initial_vector_provided

◆ resid

◆ sigmar

◆ sigmai

◆ counter

◆ counter_map

◆ validity_pointers

◆ object_info

◆ mutex