Reference documentation for deal.II version 9.4.1
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p4est_wrappers.cc
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1// ---------------------------------------------------------------------
2//
3// Copyright (C) 2008 - 2021 by the deal.II authors
4//
5// This file is part of the deal.II library.
6//
7// The deal.II library is free software; you can use it, redistribute
8// it, and/or modify it under the terms of the GNU Lesser General
9// Public License as published by the Free Software Foundation; either
10// version 2.1 of the License, or (at your option) any later version.
11// The full text of the license can be found in the file LICENSE.md at
12// the top level directory of deal.II.
13//
14// ---------------------------------------------------------------------
15
16
17#include <deal.II/distributed/p4est_wrappers.h>
18#include <deal.II/distributed/tria.h>
19
20DEAL_II_NAMESPACE_OPEN
21
22#ifdef DEAL_II_WITH_P4EST
23
24namespace internal
25{
26 namespace p4est
27 {
28 namespace
29 {
30 template <int dim, int spacedim>
31 typename ::Triangulation<dim, spacedim>::cell_iterator
32 cell_from_quad(
33 const ::parallel::distributed::Triangulation<dim, spacedim>
34 *triangulation,
35 const typename ::internal::p4est::types<dim>::topidx treeidx,
36 const typename ::internal::p4est::types<dim>::quadrant &quad)
37 {
38 int i, l = quad.level;
39 ::types::global_dof_index dealii_index =
40 triangulation->get_p4est_tree_to_coarse_cell_permutation()[treeidx];
41
42 for (i = 0; i < l; ++i)
43 {
44 typename ::Triangulation<dim, spacedim>::cell_iterator cell(
45 triangulation, i, dealii_index);
46 const int child_id =
47 ::internal::p4est::functions<dim>::quadrant_ancestor_id(
48 &quad, i + 1);
49 Assert(cell->has_children(),
50 ExcMessage("p4est quadrant does not correspond to a cell!"));
51 dealii_index = cell->child_index(child_id);
52 }
53
54 typename ::Triangulation<dim, spacedim>::cell_iterator out_cell(
55 triangulation, l, dealii_index);
56
57 return out_cell;
58 }
59
64 template <int dim, int spacedim>
65 struct FindGhosts
66 {
67 const typename ::parallel::distributed::Triangulation<dim,
68 spacedim>
69 * triangulation;
70 sc_array_t *subids;
71 std::map<unsigned int, std::set<::types::subdomain_id>>
72 *vertices_with_ghost_neighbors;
73 };
74
75
81 template <int dim, int spacedim>
82 void
83 find_ghosts_corner(
84 typename ::internal::p4est::iter<dim>::corner_info *info,
85 void * user_data)
86 {
87 int i, j;
88 int nsides = info->sides.elem_count;
89 auto *sides = reinterpret_cast<
90 typename ::internal::p4est::iter<dim>::corner_side *>(
91 info->sides.array);
92 FindGhosts<dim, spacedim> *fg =
93 static_cast<FindGhosts<dim, spacedim> *>(user_data);
94 sc_array_t *subids = fg->subids;
95 const ::parallel::distributed::Triangulation<dim, spacedim>
96 * triangulation = fg->triangulation;
97 int nsubs;
98 ::types::subdomain_id *subdomain_ids;
99 std::map<unsigned int, std::set<::types::subdomain_id>>
100 *vertices_with_ghost_neighbors = fg->vertices_with_ghost_neighbors;
101
102 subids->elem_count = 0;
103 for (i = 0; i < nsides; ++i)
104 {
105 if (sides[i].is_ghost)
106 {
107 typename ::parallel::distributed::
108 Triangulation<dim, spacedim>::cell_iterator cell =
109 cell_from_quad(triangulation,
110 sides[i].treeid,
111 *(sides[i].quad));
112 Assert(cell->is_ghost(),
113 ExcMessage("ghost quad did not find ghost cell"));
114 ::types::subdomain_id *subid =
115 static_cast<::types::subdomain_id *>(
116 sc_array_push(subids));
117 *subid = cell->subdomain_id();
118 }
119 }
120
121 if (!subids->elem_count)
122 {
123 return;
124 }
125
126 nsubs = static_cast<int>(subids->elem_count);
127 subdomain_ids =
128 reinterpret_cast<::types::subdomain_id *>(subids->array);
129
130 for (i = 0; i < nsides; ++i)
131 {
132 if (!sides[i].is_ghost)
133 {
134 typename ::parallel::distributed::
135 Triangulation<dim, spacedim>::cell_iterator cell =
136 cell_from_quad(triangulation,
137 sides[i].treeid,
138 *(sides[i].quad));
139
140 Assert(!cell->is_ghost(),
141 ExcMessage("local quad found ghost cell"));
142
143 for (j = 0; j < nsubs; ++j)
144 {
145 (*vertices_with_ghost_neighbors)[cell->vertex_index(
146 sides[i].corner)]
147 .insert(subdomain_ids[j]);
148 }
149 }
150 }
151
152 subids->elem_count = 0;
153 }
154
158 template <int dim, int spacedim>
159 void
160 find_ghosts_edge(
161 typename ::internal::p4est::iter<dim>::edge_info *info,
162 void * user_data)
163 {
164 int i, j, k;
165 int nsides = info->sides.elem_count;
166 auto *sides = reinterpret_cast<
167 typename ::internal::p4est::iter<dim>::edge_side *>(
168 info->sides.array);
169 auto * fg = static_cast<FindGhosts<dim, spacedim> *>(user_data);
170 sc_array_t *subids = fg->subids;
171 const ::parallel::distributed::Triangulation<dim, spacedim>
172 * triangulation = fg->triangulation;
173 int nsubs;
174 ::types::subdomain_id *subdomain_ids;
175 std::map<unsigned int, std::set<::types::subdomain_id>>
176 *vertices_with_ghost_neighbors = fg->vertices_with_ghost_neighbors;
177
178 subids->elem_count = 0;
179 for (i = 0; i < nsides; ++i)
180 {
181 if (sides[i].is_hanging)
182 {
183 for (j = 0; j < 2; ++j)
184 {
185 if (sides[i].is.hanging.is_ghost[j])
186 {
187 typename ::parallel::distributed::
188 Triangulation<dim, spacedim>::cell_iterator cell =
189 cell_from_quad(triangulation,
190 sides[i].treeid,
191 *(sides[i].is.hanging.quad[j]));
192 ::types::subdomain_id *subid =
193 static_cast<::types::subdomain_id *>(
194 sc_array_push(subids));
195 *subid = cell->subdomain_id();
196 }
197 }
198 }
199 }
200
201 if (!subids->elem_count)
202 {
203 return;
204 }
205
206 nsubs = static_cast<int>(subids->elem_count);
207 subdomain_ids =
208 reinterpret_cast<::types::subdomain_id *>(subids->array);
209
210 for (i = 0; i < nsides; ++i)
211 {
212 if (sides[i].is_hanging)
213 {
214 for (j = 0; j < 2; ++j)
215 {
216 if (!sides[i].is.hanging.is_ghost[j])
217 {
218 typename ::parallel::distributed::
219 Triangulation<dim, spacedim>::cell_iterator cell =
220 cell_from_quad(triangulation,
221 sides[i].treeid,
222 *(sides[i].is.hanging.quad[j]));
223
224 for (k = 0; k < nsubs; ++k)
225 {
226 (*vertices_with_ghost_neighbors)
227 [cell->vertex_index(
228 p8est_edge_corners[sides[i].edge][1 ^ j])]
229 .insert(subdomain_ids[k]);
230 }
231 }
232 }
233 }
234 }
235
236 subids->elem_count = 0;
237 }
238
242 template <int dim, int spacedim>
243 void
244 find_ghosts_face(
245 typename ::internal::p4est::iter<dim>::face_info *info,
246 void * user_data)
247 {
248 int i, j, k;
249 int nsides = info->sides.elem_count;
250 auto *sides = reinterpret_cast<
251 typename ::internal::p4est::iter<dim>::face_side *>(
252 info->sides.array);
253 FindGhosts<dim, spacedim> *fg =
254 static_cast<FindGhosts<dim, spacedim> *>(user_data);
255 sc_array_t *subids = fg->subids;
256 const ::parallel::distributed::Triangulation<dim, spacedim>
257 * triangulation = fg->triangulation;
258 int nsubs;
259 ::types::subdomain_id *subdomain_ids;
260 std::map<unsigned int, std::set<::types::subdomain_id>>
261 * vertices_with_ghost_neighbors = fg->vertices_with_ghost_neighbors;
262 int limit = (dim == 2) ? 2 : 4;
263
264 subids->elem_count = 0;
265 for (i = 0; i < nsides; ++i)
266 {
267 if (sides[i].is_hanging)
268 {
269 for (j = 0; j < limit; ++j)
270 {
271 if (sides[i].is.hanging.is_ghost[j])
272 {
273 typename ::parallel::distributed::
274 Triangulation<dim, spacedim>::cell_iterator cell =
275 cell_from_quad(triangulation,
276 sides[i].treeid,
277 *(sides[i].is.hanging.quad[j]));
278 ::types::subdomain_id *subid =
279 static_cast<::types::subdomain_id *>(
280 sc_array_push(subids));
281 *subid = cell->subdomain_id();
282 }
283 }
284 }
285 }
286
287 if (!subids->elem_count)
288 {
289 return;
290 }
291
292 nsubs = static_cast<int>(subids->elem_count);
293 subdomain_ids =
294 reinterpret_cast<::types::subdomain_id *>(subids->array);
295
296 for (i = 0; i < nsides; ++i)
297 {
298 if (sides[i].is_hanging)
299 {
300 for (j = 0; j < limit; ++j)
301 {
302 if (!sides[i].is.hanging.is_ghost[j])
303 {
304 typename ::parallel::distributed::
305 Triangulation<dim, spacedim>::cell_iterator cell =
306 cell_from_quad(triangulation,
307 sides[i].treeid,
308 *(sides[i].is.hanging.quad[j]));
309
310 for (k = 0; k < nsubs; ++k)
311 {
312 if (dim == 2)
313 {
314 (*vertices_with_ghost_neighbors)
315 [cell->vertex_index(
316 p4est_face_corners[sides[i].face]
317 [(limit - 1) ^ j])]
318 .insert(subdomain_ids[k]);
319 }
320 else
321 {
322 (*vertices_with_ghost_neighbors)
323 [cell->vertex_index(
324 p8est_face_corners[sides[i].face]
325 [(limit - 1) ^ j])]
326 .insert(subdomain_ids[k]);
327 }
328 }
329 }
330 }
331 }
332 }
333
334 subids->elem_count = 0;
335 }
336 } // namespace
337
338
339 int (&functions<2>::quadrant_compare)(const void *v1, const void *v2) =
340 p4est_quadrant_compare;
341
342 void (&functions<2>::quadrant_childrenv)(const types<2>::quadrant *q,
343 types<2>::quadrant c[]) =
344 p4est_quadrant_childrenv;
345
346 int (&functions<2>::quadrant_overlaps_tree)(types<2>::tree * tree,
347 const types<2>::quadrant *q) =
348 p4est_quadrant_overlaps_tree;
349
350 void (&functions<2>::quadrant_set_morton)(types<2>::quadrant *quadrant,
351 int level,
352 std::uint64_t id) =
353 p4est_quadrant_set_morton;
354
355 int (&functions<2>::quadrant_is_equal)(const types<2>::quadrant *q1,
356 const types<2>::quadrant *q2) =
357 p4est_quadrant_is_equal;
358
359 int (&functions<2>::quadrant_is_sibling)(const types<2>::quadrant *q1,
360 const types<2>::quadrant *q2) =
361 p4est_quadrant_is_sibling;
362
363 int (&functions<2>::quadrant_is_ancestor)(const types<2>::quadrant *q1,
364 const types<2>::quadrant *q2) =
365 p4est_quadrant_is_ancestor;
366
367 int (&functions<2>::quadrant_ancestor_id)(const types<2>::quadrant *q,
368 int level) =
369 p4est_quadrant_ancestor_id;
370
371 int (&functions<2>::comm_find_owner)(types<2>::forest * p4est,
372 const types<2>::locidx which_tree,
373 const types<2>::quadrant *q,
374 const int guess) =
375 p4est_comm_find_owner;
376
377 types<2>::connectivity *(&functions<2>::connectivity_new)(
378 types<2>::topidx num_vertices,
379 types<2>::topidx num_trees,
380 types<2>::topidx num_corners,
381 types<2>::topidx num_vtt) = p4est_connectivity_new;
382
383 types<2>::connectivity *(&functions<2>::connectivity_new_copy)(
384 types<2>::topidx num_vertices,
385 types<2>::topidx num_trees,
386 types<2>::topidx num_corners,
387 const double * vertices,
388 const types<2>::topidx *ttv,
389 const types<2>::topidx *ttt,
390 const int8_t * ttf,
391 const types<2>::topidx *ttc,
392 const types<2>::topidx *coff,
393 const types<2>::topidx *ctt,
394 const int8_t * ctc) = p4est_connectivity_new_copy;
395
396 void (&functions<2>::connectivity_join_faces)(types<2>::connectivity *conn,
397 types<2>::topidx tree_left,
398 types<2>::topidx tree_right,
399 int face_left,
400 int face_right,
401 int orientation) =
402 p4est_connectivity_join_faces;
403
404 void (&functions<2>::connectivity_destroy)(
405 p4est_connectivity_t *connectivity) = p4est_connectivity_destroy;
406
407 types<2>::forest *(&functions<2>::new_forest)(
408 MPI_Comm mpicomm,
409 types<2>::connectivity *connectivity,
410 types<2>::locidx min_quadrants,
411 int min_level,
412 int fill_uniform,
413 std::size_t data_size,
414 p4est_init_t init_fn,
415 void * user_pointer) = p4est_new_ext;
416
417 types<2>::forest *(&functions<2>::copy_forest)(types<2>::forest *input,
418 int copy_data) = p4est_copy;
419
420 void (&functions<2>::destroy)(types<2>::forest *p4est) = p4est_destroy;
421
422 void (&functions<2>::refine)(types<2>::forest *p4est,
423 int refine_recursive,
424 p4est_refine_t refine_fn,
425 p4est_init_t init_fn) = p4est_refine;
426
427 void (&functions<2>::coarsen)(types<2>::forest *p4est,
428 int coarsen_recursive,
429 p4est_coarsen_t coarsen_fn,
430 p4est_init_t init_fn) = p4est_coarsen;
431
432 void (&functions<2>::balance)(types<2>::forest * p4est,
433 types<2>::balance_type btype,
434 p4est_init_t init_fn) = p4est_balance;
435
436 types<2>::gloidx (&functions<2>::partition)(types<2>::forest *p4est,
437 int partition_for_coarsening,
438 p4est_weight_t weight_fn) =
439 p4est_partition_ext;
440
441 void (&functions<2>::save)(const char * filename,
442 types<2>::forest *p4est,
443 int save_data) = p4est_save;
444
445 types<2>::forest *(&functions<2>::load_ext)(
446 const char * filename,
447 MPI_Comm mpicomm,
448 std::size_t data_size,
449 int load_data,
450 int autopartition,
451 int broadcasthead,
452 void * user_pointer,
453 types<2>::connectivity **p4est) = p4est_load_ext;
454
455 int (&functions<2>::connectivity_save)(
456 const char * filename,
457 types<2>::connectivity *connectivity) = p4est_connectivity_save;
458
459 int (&functions<2>::connectivity_is_valid)(
460 types<2>::connectivity *connectivity) = p4est_connectivity_is_valid;
461
462 types<2>::connectivity *(&functions<2>::connectivity_load)(
463 const char * filename,
464 std::size_t *length) = p4est_connectivity_load;
465
466 unsigned int (&functions<2>::checksum)(types<2>::forest *p4est) =
467 p4est_checksum;
468
469 void (&functions<2>::vtk_write_file)(types<2>::forest *p4est,
470 p4est_geometry_t *,
471 const char *baseName) =
472 p4est_vtk_write_file;
473
474 types<2>::ghost *(&functions<2>::ghost_new)(types<2>::forest * p4est,
475 types<2>::balance_type btype) =
476 p4est_ghost_new;
477
478 void (&functions<2>::ghost_destroy)(types<2>::ghost *ghost) =
479 p4est_ghost_destroy;
480
481 void (&functions<2>::reset_data)(types<2>::forest *p4est,
482 std::size_t data_size,
483 p4est_init_t init_fn,
484 void *user_pointer) = p4est_reset_data;
485
486 std::size_t (&functions<2>::forest_memory_used)(types<2>::forest *p4est) =
487 p4est_memory_used;
488
489 std::size_t (&functions<2>::connectivity_memory_used)(
490 types<2>::connectivity *p4est) = p4est_connectivity_memory_used;
491
492 constexpr unsigned int functions<2>::max_level;
493
494 void (&functions<2>::transfer_fixed)(const types<2>::gloidx *dest_gfq,
495 const types<2>::gloidx *src_gfq,
496 MPI_Comm mpicomm,
497 int tag,
498 void * dest_data,
499 const void * src_data,
500 std::size_t data_size) =
501 p4est_transfer_fixed;
502
503 types<2>::transfer_context *(&functions<2>::transfer_fixed_begin)(
504 const types<2>::gloidx *dest_gfq,
505 const types<2>::gloidx *src_gfq,
506 MPI_Comm mpicomm,
507 int tag,
508 void * dest_data,
509 const void * src_data,
510 std::size_t data_size) = p4est_transfer_fixed_begin;
511
512 void (&functions<2>::transfer_fixed_end)(types<2>::transfer_context *tc) =
513 p4est_transfer_fixed_end;
514
515 void (&functions<2>::transfer_custom)(const types<2>::gloidx *dest_gfq,
516 const types<2>::gloidx *src_gfq,
517 MPI_Comm mpicomm,
518 int tag,
519 void * dest_data,
520 const int * dest_sizes,
521 const void * src_data,
522 const int * src_sizes) =
523 p4est_transfer_custom;
524
525 types<2>::transfer_context *(&functions<2>::transfer_custom_begin)(
526 const types<2>::gloidx *dest_gfq,
527 const types<2>::gloidx *src_gfq,
528 MPI_Comm mpicomm,
529 int tag,
530 void * dest_data,
531 const int * dest_sizes,
532 const void * src_data,
533 const int * src_sizes) = p4est_transfer_custom_begin;
534
535 void (&functions<2>::transfer_custom_end)(types<2>::transfer_context *tc) =
536 p4est_transfer_custom_end;
537
538# ifdef P4EST_SEARCH_LOCAL
539 void (&functions<2>::search_partition)(
540 types<2>::forest * p4est,
541 int call_post,
542 types<2>::search_partition_callback quadrant_fn,
543 types<2>::search_partition_callback point_fn,
544 sc_array_t * points) = p4est_search_partition;
545# endif
546
547 void (&functions<2>::quadrant_coord_to_vertex)(
548 types<2>::connectivity * connectivity,
549 types<2>::topidx treeid,
550 types<2>::quadrant_coord x,
551 types<2>::quadrant_coord y,
552 double vxyz[3]) = p4est_qcoord_to_vertex;
553
554 int (&functions<3>::quadrant_compare)(const void *v1, const void *v2) =
555 p8est_quadrant_compare;
556
557 void (&functions<3>::quadrant_childrenv)(const types<3>::quadrant *q,
558 types<3>::quadrant c[]) =
559 p8est_quadrant_childrenv;
560
561 int (&functions<3>::quadrant_overlaps_tree)(types<3>::tree * tree,
562 const types<3>::quadrant *q) =
563 p8est_quadrant_overlaps_tree;
564
565 void (&functions<3>::quadrant_set_morton)(types<3>::quadrant *quadrant,
566 int level,
567 std::uint64_t id) =
568 p8est_quadrant_set_morton;
569
570 int (&functions<3>::quadrant_is_equal)(const types<3>::quadrant *q1,
571 const types<3>::quadrant *q2) =
572 p8est_quadrant_is_equal;
573
574 int (&functions<3>::quadrant_is_sibling)(const types<3>::quadrant *q1,
575 const types<3>::quadrant *q2) =
576 p8est_quadrant_is_sibling;
577
578 int (&functions<3>::quadrant_is_ancestor)(const types<3>::quadrant *q1,
579 const types<3>::quadrant *q2) =
580 p8est_quadrant_is_ancestor;
581
582 int (&functions<3>::quadrant_ancestor_id)(const types<3>::quadrant *q,
583 int level) =
584 p8est_quadrant_ancestor_id;
585
586 int (&functions<3>::comm_find_owner)(types<3>::forest * p4est,
587 const types<3>::locidx which_tree,
588 const types<3>::quadrant *q,
589 const int guess) =
590 p8est_comm_find_owner;
591
592 types<3>::connectivity *(&functions<3>::connectivity_new)(
593 types<3>::topidx num_vertices,
594 types<3>::topidx num_trees,
595 types<3>::topidx num_edges,
596 types<3>::topidx num_ett,
597 types<3>::topidx num_corners,
598 types<3>::topidx num_ctt) = p8est_connectivity_new;
599
600 types<3>::connectivity *(&functions<3>::connectivity_new_copy)(
601 types<3>::topidx num_vertices,
602 types<3>::topidx num_trees,
603 types<3>::topidx num_edges,
604 types<3>::topidx num_corners,
605 const double * vertices,
606 const types<3>::topidx *ttv,
607 const types<3>::topidx *ttt,
608 const int8_t * ttf,
609 const types<3>::topidx *tte,
610 const types<3>::topidx *eoff,
611 const types<3>::topidx *ett,
612 const int8_t * ete,
613 const types<3>::topidx *ttc,
614 const types<3>::topidx *coff,
615 const types<3>::topidx *ctt,
616 const int8_t * ctc) = p8est_connectivity_new_copy;
617
618 void (&functions<3>::connectivity_destroy)(
619 p8est_connectivity_t *connectivity) = p8est_connectivity_destroy;
620
621 void (&functions<3>::connectivity_join_faces)(types<3>::connectivity *conn,
622 types<3>::topidx tree_left,
623 types<3>::topidx tree_right,
624 int face_left,
625 int face_right,
626 int orientation) =
627 p8est_connectivity_join_faces;
628
629 types<3>::forest *(&functions<3>::new_forest)(
630 MPI_Comm mpicomm,
631 types<3>::connectivity *connectivity,
632 types<3>::locidx min_quadrants,
633 int min_level,
634 int fill_uniform,
635 std::size_t data_size,
636 p8est_init_t init_fn,
637 void * user_pointer) = p8est_new_ext;
638
639 types<3>::forest *(&functions<3>::copy_forest)(types<3>::forest *input,
640 int copy_data) = p8est_copy;
641
642 void (&functions<3>::destroy)(types<3>::forest *p8est) = p8est_destroy;
643
644 void (&functions<3>::refine)(types<3>::forest *p8est,
645 int refine_recursive,
646 p8est_refine_t refine_fn,
647 p8est_init_t init_fn) = p8est_refine;
648
649 void (&functions<3>::coarsen)(types<3>::forest *p8est,
650 int coarsen_recursive,
651 p8est_coarsen_t coarsen_fn,
652 p8est_init_t init_fn) = p8est_coarsen;
653
654 void (&functions<3>::balance)(types<3>::forest * p8est,
655 types<3>::balance_type btype,
656 p8est_init_t init_fn) = p8est_balance;
657
658 types<3>::gloidx (&functions<3>::partition)(types<3>::forest *p8est,
659 int partition_for_coarsening,
660 p8est_weight_t weight_fn) =
661 p8est_partition_ext;
662
663 void (&functions<3>::save)(const char * filename,
664 types<3>::forest *p4est,
665 int save_data) = p8est_save;
666
667 types<3>::forest *(&functions<3>::load_ext)(
668 const char * filename,
669 MPI_Comm mpicomm,
670 std::size_t data_size,
671 int load_data,
672 int autopartition,
673 int broadcasthead,
674 void * user_pointer,
675 types<3>::connectivity **p4est) = p8est_load_ext;
676
677 int (&functions<3>::connectivity_save)(
678 const char * filename,
679 types<3>::connectivity *connectivity) = p8est_connectivity_save;
680
681 int (&functions<3>::connectivity_is_valid)(
682 types<3>::connectivity *connectivity) = p8est_connectivity_is_valid;
683
684 types<3>::connectivity *(&functions<3>::connectivity_load)(
685 const char * filename,
686 std::size_t *length) = p8est_connectivity_load;
687
688 unsigned int (&functions<3>::checksum)(types<3>::forest *p8est) =
689 p8est_checksum;
690
691 void (&functions<3>::vtk_write_file)(types<3>::forest *p8est,
692 p8est_geometry_t *,
693 const char *baseName) =
694 p8est_vtk_write_file;
695
696 types<3>::ghost *(&functions<3>::ghost_new)(types<3>::forest * p4est,
697 types<3>::balance_type btype) =
698 p8est_ghost_new;
699
700 void (&functions<3>::ghost_destroy)(types<3>::ghost *ghost) =
701 p8est_ghost_destroy;
702
703 void (&functions<3>::reset_data)(types<3>::forest *p4est,
704 std::size_t data_size,
705 p8est_init_t init_fn,
706 void *user_pointer) = p8est_reset_data;
707
708 std::size_t (&functions<3>::forest_memory_used)(types<3>::forest *p4est) =
709 p8est_memory_used;
710
711 std::size_t (&functions<3>::connectivity_memory_used)(
712 types<3>::connectivity *p4est) = p8est_connectivity_memory_used;
713
714 constexpr unsigned int functions<3>::max_level;
715
716 void (&functions<3>::transfer_fixed)(const types<3>::gloidx *dest_gfq,
717 const types<3>::gloidx *src_gfq,
718 MPI_Comm mpicomm,
719 int tag,
720 void * dest_data,
721 const void * src_data,
722 std::size_t data_size) =
723 p8est_transfer_fixed;
724
725 types<3>::transfer_context *(&functions<3>::transfer_fixed_begin)(
726 const types<3>::gloidx *dest_gfq,
727 const types<3>::gloidx *src_gfq,
728 MPI_Comm mpicomm,
729 int tag,
730 void * dest_data,
731 const void * src_data,
732 std::size_t data_size) = p8est_transfer_fixed_begin;
733
734 void (&functions<3>::transfer_fixed_end)(types<3>::transfer_context *tc) =
735 p8est_transfer_fixed_end;
736
737 void (&functions<3>::transfer_custom)(const types<3>::gloidx *dest_gfq,
738 const types<3>::gloidx *src_gfq,
739 MPI_Comm mpicomm,
740 int tag,
741 void * dest_data,
742 const int * dest_sizes,
743 const void * src_data,
744 const int * src_sizes) =
745 p8est_transfer_custom;
746
747 types<3>::transfer_context *(&functions<3>::transfer_custom_begin)(
748 const types<3>::gloidx *dest_gfq,
749 const types<3>::gloidx *src_gfq,
750 MPI_Comm mpicomm,
751 int tag,
752 void * dest_data,
753 const int * dest_sizes,
754 const void * src_data,
755 const int * src_sizes) = p8est_transfer_custom_begin;
756
757 void (&functions<3>::transfer_custom_end)(types<3>::transfer_context *tc) =
758 p8est_transfer_custom_end;
759
760# ifdef P4EST_SEARCH_LOCAL
761 void (&functions<3>::search_partition)(
762 types<3>::forest * p4est,
763 int call_post,
764 types<3>::search_partition_callback quadrant_fn,
765 types<3>::search_partition_callback point_fn,
766 sc_array_t * points) = p8est_search_partition;
767# endif
768
769 void (&functions<3>::quadrant_coord_to_vertex)(
770 types<3>::connectivity * connectivity,
771 types<3>::topidx treeid,
772 types<3>::quadrant_coord x,
773 types<3>::quadrant_coord y,
774 types<3>::quadrant_coord z,
775 double vxyz[3]) = p8est_qcoord_to_vertex;
776
777 template <int dim>
778 void
779 init_quadrant_children(
780 const typename types<dim>::quadrant &p4est_cell,
781 typename types<dim>::quadrant (
782 &p4est_children)[::GeometryInfo<dim>::max_children_per_cell])
783 {
784 for (unsigned int c = 0;
785 c < ::GeometryInfo<dim>::max_children_per_cell;
786 ++c)
787 switch (dim)
788 {
789 case 2:
790 P4EST_QUADRANT_INIT(&p4est_children[c]);
791 break;
792 case 3:
793 P8EST_QUADRANT_INIT(&p4est_children[c]);
794 break;
795 default:
796 Assert(false, ExcNotImplemented());
797 }
798
799
800 functions<dim>::quadrant_childrenv(&p4est_cell, p4est_children);
801 }
802
803 template <int dim>
804 void
805 init_coarse_quadrant(typename types<dim>::quadrant &quad)
806 {
807 switch (dim)
808 {
809 case 2:
810 P4EST_QUADRANT_INIT(&quad);
811 break;
812 case 3:
813 P8EST_QUADRANT_INIT(&quad);
814 break;
815 default:
816 Assert(false, ExcNotImplemented());
817 }
818 functions<dim>::quadrant_set_morton(&quad,
819 /*level=*/0,
820 /*index=*/0);
821 }
822
823 template <int dim>
824 bool
825 quadrant_is_equal(const typename types<dim>::quadrant &q1,
826 const typename types<dim>::quadrant &q2)
827 {
828 return functions<dim>::quadrant_is_equal(&q1, &q2);
829 }
830
831
832
833 template <int dim>
834 bool
835 quadrant_is_ancestor(const typename types<dim>::quadrant &q1,
836 const typename types<dim>::quadrant &q2)
837 {
838 return functions<dim>::quadrant_is_ancestor(&q1, &q2);
839 }
840
841 template <int dim>
842 bool
843 tree_exists_locally(const typename types<dim>::forest *parallel_forest,
844 const typename types<dim>::topidx coarse_grid_cell)
845 {
846 Assert(coarse_grid_cell < parallel_forest->connectivity->num_trees,
847 ExcInternalError());
848 return ((coarse_grid_cell >= parallel_forest->first_local_tree) &&
849 (coarse_grid_cell <= parallel_forest->last_local_tree));
850 }
851
852
853
854 // template specializations
855
856 template <>
857 typename types<2>::connectivity *
858 copy_connectivity<2>(const typename types<2>::connectivity *connectivity)
859 {
860 return functions<2>::connectivity_new_copy(
861 connectivity->num_vertices,
862 connectivity->num_trees,
863 connectivity->num_corners,
864 connectivity->vertices,
865 connectivity->tree_to_vertex,
866 connectivity->tree_to_tree,
867 connectivity->tree_to_face,
868 connectivity->tree_to_corner,
869 connectivity->ctt_offset,
870 connectivity->corner_to_tree,
871 connectivity->corner_to_corner);
872 }
873
874 template <>
875 typename types<3>::connectivity *
876 copy_connectivity<3>(const typename types<3>::connectivity *connectivity)
877 {
878 return functions<3>::connectivity_new_copy(
879 connectivity->num_vertices,
880 connectivity->num_trees,
881 connectivity->num_edges,
882 connectivity->num_corners,
883 connectivity->vertices,
884 connectivity->tree_to_vertex,
885 connectivity->tree_to_tree,
886 connectivity->tree_to_face,
887 connectivity->tree_to_edge,
888 connectivity->ett_offset,
889 connectivity->edge_to_tree,
890 connectivity->edge_to_edge,
891 connectivity->tree_to_corner,
892 connectivity->ctt_offset,
893 connectivity->corner_to_tree,
894 connectivity->corner_to_corner);
895 }
896
897
898
899 template <>
900 bool
901 quadrant_is_equal<1>(const typename types<1>::quadrant &q1,
902 const typename types<1>::quadrant &q2)
903 {
904 return q1 == q2;
905 }
906
907
908
909 template <>
910 bool
911 quadrant_is_ancestor<1>(types<1>::quadrant const &q1,
912 types<1>::quadrant const &q2)
913 {
914 // determine level of quadrants
915 const int level_1 = (q1 << types<1>::max_n_child_indices_bits) >>
916 types<1>::max_n_child_indices_bits;
917 const int level_2 = (q2 << types<1>::max_n_child_indices_bits) >>
918 types<1>::max_n_child_indices_bits;
919
920 // q1 can be an ancestor of q2 if q1's level is smaller
921 if (level_1 >= level_2)
922 return false;
923
924 // extract path of quadrants up to level of possible ancestor q1
925 const int truncated_id_1 = (q1 >> (types<1>::n_bits - 1 - level_1))
926 << (types<1>::n_bits - 1 - level_1);
927 const int truncated_id_2 = (q2 >> (types<1>::n_bits - 1 - level_1))
928 << (types<1>::n_bits - 1 - level_1);
929
930 // compare paths
931 return truncated_id_1 == truncated_id_2;
932 }
933
934
935
936 template <>
937 void
938 init_quadrant_children<1>(
939 const typename types<1>::quadrant &q,
940 typename types<1>::quadrant (
941 &p4est_children)[::GeometryInfo<1>::max_children_per_cell])
942 {
943 // determine the current level of quadrant
944 const int level_parent = (q << types<1>::max_n_child_indices_bits) >>
945 types<1>::max_n_child_indices_bits;
946 const int level_child = level_parent + 1;
947
948 // left child: only n_child_indices has to be incremented
949 p4est_children[0] = (q + 1);
950
951 // right child: increment and set a bit to 1 indicating that it is a right
952 // child
953 p4est_children[1] = (q + 1) | (1 << (types<1>::n_bits - 1 - level_child));
954 }
955
956
957
958 template <>
959 void
960 init_coarse_quadrant<1>(typename types<1>::quadrant &quad)
961 {
962 quad = 0;
963 }
964
965 } // namespace p4est
966} // namespace internal
967
968#endif // DEAL_II_WITH_P4EST
969
970/*-------------- Explicit Instantiations -------------------------------*/
971#include "p4est_wrappers.inst"
972
973
974DEAL_II_NAMESPACE_CLOSE
MPI_Comm
DEAL_II_NAMESPACE_OPEN
#define DEAL_II_NAMESPACE_OPEN
Definition: config.h:442
DEAL_II_NAMESPACE_CLOSE
#define DEAL_II_NAMESPACE_CLOSE
Definition: config.h:443
vertices
Point< 3 > vertices[4]
Definition: data_out_base.cc:192
level
unsigned int level
Definition: grid_out.cc:4606
v1
const unsigned int v1
Definition: grid_tools.cc:1000
StandardExceptions::ExcNotImplemented
static ::ExceptionBase & ExcNotImplemented()
Assert
#define Assert(cond, exc)
Definition: exceptions.h:1473
StandardExceptions::ExcInternalError
static ::ExceptionBase & ExcInternalError()
StandardExceptions::ExcMessage
static ::ExceptionBase & ExcMessage(std::string arg1)
Physics::Elasticity::Kinematics::l
Tensor< 2, dim, Number > l(const Tensor< 2, dim, Number > &F, const Tensor< 2, dim, Number > &dF_dt)
internal::p4est::init_quadrant_children< 1 >
void init_quadrant_children< 1 >(const typename types< 1 >::quadrant &q, typename types< 1 >::quadrant(&p4est_children)[::GeometryInfo< 1 >::max_children_per_cell])
Definition: p4est_wrappers.cc:938
internal::p4est::init_coarse_quadrant
void init_coarse_quadrant(typename types< dim >::quadrant &quad)
Definition: p4est_wrappers.cc:805
internal::p4est::quadrant_is_equal< 1 >
bool quadrant_is_equal< 1 >(const typename types< 1 >::quadrant &q1, const typename types< 1 >::quadrant &q2)
Definition: p4est_wrappers.cc:901
internal::p4est::copy_connectivity< 2 >
types< 2 >::connectivity * copy_connectivity< 2 >(const typename types< 2 >::connectivity *connectivity)
Definition: p4est_wrappers.cc:858
internal::p4est::copy_connectivity< 3 >
types< 3 >::connectivity * copy_connectivity< 3 >(const typename types< 3 >::connectivity *connectivity)
Definition: p4est_wrappers.cc:876
internal::p4est::quadrant_is_equal
bool quadrant_is_equal(const typename types< dim >::quadrant &q1, const typename types< dim >::quadrant &q2)
Definition: p4est_wrappers.cc:825
internal::p4est::init_quadrant_children
void init_quadrant_children(const typename types< dim >::quadrant &p4est_cell, typename types< dim >::quadrant(&p4est_children)[::GeometryInfo< dim >::max_children_per_cell])
Definition: p4est_wrappers.cc:779
internal::p4est::quadrant_is_ancestor
bool quadrant_is_ancestor(const typename types< dim >::quadrant &q1, const typename types< dim >::quadrant &q2)
Definition: p4est_wrappers.cc:835
internal::p4est::init_coarse_quadrant< 1 >
void init_coarse_quadrant< 1 >(typename types< 1 >::quadrant &quad)
Definition: p4est_wrappers.cc:960
internal::p4est::quadrant_is_ancestor< 1 >
bool quadrant_is_ancestor< 1 >(types< 1 >::quadrant const &q1, types< 1 >::quadrant const &q2)
Definition: p4est_wrappers.cc:911
internal::p4est::tree_exists_locally
bool tree_exists_locally(const typename types< dim >::forest *parallel_forest, const typename types< dim >::topidx coarse_grid_cell)
Definition: p4est_wrappers.cc:843
subids
sc_array_t * subids
Definition: p4est_wrappers.cc:70
triangulation
const ::parallel::distributed::Triangulation< dim, spacedim > * triangulation
Definition: p4est_wrappers.cc:69
vertices_with_ghost_neighbors
std::map< unsigned int, std::set<::types::subdomain_id > > * vertices_with_ghost_neighbors
Definition: p4est_wrappers.cc:72
p4est_wrappers.h
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