#include <deal.II/lac/petsc_parallel_block_vector.h>

Inheritance diagram for PETScWrappers::MPI::BlockVector:

Public Types
typedef BlockVectorBase< Vector >	BaseClass

typedef BaseClass::BlockType	BlockType

typedef BaseClass::value_type	value_type

Public Types inherited from BlockVectorBase< Vector >
typedef Vector	BlockType

typedef BlockType::real_type	real_type

Public Member Functions
	BlockVector ()=default

	BlockVector (const unsigned int n_blocks, const MPI_Comm &communicator, const size_type block_size, const size_type local_size)

	BlockVector (const BlockVector &V)

	BlockVector (const std::vector< size_type > &block_sizes, const MPI_Comm &communicator, const std::vector< size_type > &local_elements)

	BlockVector (const std::vector< IndexSet > &parallel_partitioning, const MPI_Comm &communicator=MPI_COMM_WORLD)

	BlockVector (const std::vector< IndexSet > &parallel_partitioning, const std::vector< IndexSet > &ghost_indices, const MPI_Comm &communicator)

	~BlockVector ()=default

BlockVector &	operator= (const value_type s)

BlockVector &	operator= (const BlockVector &V)

void	reinit (const unsigned int n_blocks, const MPI_Comm &communicator, const size_type block_size, const size_type local_size, const bool omit_zeroing_entries=false)

void	reinit (const std::vector< size_type > &block_sizes, const MPI_Comm &communicator, const std::vector< size_type > &local_sizes, const bool omit_zeroing_entries=false)

void	reinit (const BlockVector &V, const bool omit_zeroing_entries=false)

void	reinit (const std::vector< IndexSet > &parallel_partitioning, const MPI_Comm &communicator)

void	reinit (const std::vector< IndexSet > &parallel_partitioning, const std::vector< IndexSet > &ghost_entries, const MPI_Comm &communicator)

void	reinit (const unsigned int num_blocks)

bool	has_ghost_elements () const

const MPI_Comm &	get_mpi_communicator () const

void	swap (BlockVector &v)

void	print (std::ostream &out, const unsigned int precision=3, const bool scientific=true, const bool across=true) const

Public Member Functions inherited from BlockVectorBase< Vector >
	BlockVectorBase ()=default

	BlockVectorBase (const BlockVectorBase &)=default

	BlockVectorBase (BlockVectorBase &&) noexcept=default

void	collect_sizes ()

void	compress (::VectorOperation::values operation)

BlockType &	block (const unsigned int i)

const BlockType &	block (const unsigned int i) const

const BlockIndices &	get_block_indices () const

unsigned int	n_blocks () const

std::size_t	size () const

IndexSet	locally_owned_elements () const

iterator	begin ()

const_iterator	begin () const

iterator	end ()

const_iterator	end () const

value_type	operator() (const size_type i) const

reference	operator() (const size_type i)

value_type	operator[] (const size_type i) const

reference	operator[] (const size_type i)

void	extract_subvector_to (const std::vector< size_type > &indices, std::vector< OtherNumber > &values) const

void	extract_subvector_to (ForwardIterator indices_begin, const ForwardIterator indices_end, OutputIterator values_begin) const

BlockVectorBase &	operator= (const value_type s)

BlockVectorBase &	operator= (const BlockVectorBase &V)

BlockVectorBase &	operator= (BlockVectorBase &&)=default

BlockVectorBase &	operator= (const BlockVectorBase< VectorType2 > &V)

BlockVectorBase &	operator= (const Vector &v)

bool	operator== (const BlockVectorBase< VectorType2 > &v) const

value_type	operator* (const BlockVectorBase &V) const

real_type	norm_sqr () const

value_type	mean_value () const

real_type	l1_norm () const

real_type	l2_norm () const

real_type	linfty_norm () const

value_type	add_and_dot (const value_type a, const BlockVectorBase &V, const BlockVectorBase &W)

bool	in_local_range (const size_type global_index) const

bool	all_zero () const

bool	is_non_negative () const

BlockVectorBase &	operator+= (const BlockVectorBase &V)

BlockVectorBase &	operator-= (const BlockVectorBase &V)

void	add (const std::vector< size_type > &indices, const std::vector< Number > &values)

void	add (const std::vector< size_type > &indices, const Vector< Number > &values)

void	add (const size_type n_elements, const size_type indices, const Number values)

void	add (const value_type s)

void	add (const value_type a, const BlockVectorBase &V)

void	add (const value_type a, const BlockVectorBase &V, const value_type b, const BlockVectorBase &W)

void	sadd (const value_type s, const BlockVectorBase &V)

void	sadd (const value_type s, const value_type a, const BlockVectorBase &V)

void	sadd (const value_type s, const value_type a, const BlockVectorBase &V, const value_type b, const BlockVectorBase &W)

void	sadd (const value_type s, const value_type a, const BlockVectorBase &V, const value_type b, const BlockVectorBase &W, const value_type c, const BlockVectorBase &X)

BlockVectorBase &	operator*= (const value_type factor)

BlockVectorBase &	operator/= (const value_type factor)

void	scale (const BlockVector2 &v)

void	equ (const value_type a, const BlockVector2 &V)

void	equ (const value_type a, const BlockVectorBase &V, const value_type b, const BlockVectorBase &W)

void	update_ghost_values () const

std::size_t	memory_consumption () const

Public Member Functions inherited from Subscriptor
	Subscriptor ()

	Subscriptor (const Subscriptor &)

	Subscriptor (Subscriptor &&) noexcept

virtual	~Subscriptor ()

Subscriptor &	operator= (const Subscriptor &)

Subscriptor &	operator= (Subscriptor &&) noexcept

void	subscribe (const char *identifier=nullptr) const

void	unsubscribe (const char *identifier=nullptr) const

unsigned int	n_subscriptions () const

void	list_subscribers () const

template<class Archive >
void	serialize (Archive &ar, const unsigned int version)

Static Public Member Functions
static ::ExceptionBase &	ExcIteratorRangeDoesNotMatchVectorSize ()

static ::ExceptionBase &	ExcNonMatchingBlockVectors ()

Static Public Member Functions inherited from Subscriptor
static ::ExceptionBase &	ExcInUse (int arg1, std::string arg2, std::string arg3)

static ::ExceptionBase &	ExcNoSubscriber (std::string arg1, std::string arg2)

Related Functions
(Note that these are not member functions.)
void	swap (BlockVector &u, BlockVector &v)

Additional Inherited Members
Protected Attributes inherited from BlockVectorBase< Vector >
std::vector< Vector >	components

BlockIndices	block_indices

Detailed Description

An implementation of block vectors based on the parallel vector class implemented in PETScWrappers. While the base class provides for most of the interface, this class handles the actual allocation of vectors and provides functions that are specific to the underlying vector type.

The model of distribution of data is such that each of the blocks is distributed across all MPI processes named in the MPI communicator. I.e. we don't just distribute the whole vector, but each component. In the constructors and reinit() functions, one therefore not only has to specify the sizes of the individual blocks, but also the number of elements of each of these blocks to be stored on the local process.

@ Block (linear algebra)

Author: Wolfgang Bangerth, 2004

Definition at line 62 of file petsc_parallel_block_vector.h.

Member Typedef Documentation

◆ BaseClass

typedef BlockVectorBase<Vector> PETScWrappers::MPI::BlockVector::BaseClass

Typedef the base class for simpler access to its own typedefs.

Definition at line 68 of file petsc_parallel_block_vector.h.

◆ BlockType

typedef BaseClass::BlockType PETScWrappers::MPI::BlockVector::BlockType

Typedef the type of the underlying vector.

Definition at line 73 of file petsc_parallel_block_vector.h.

◆ value_type

typedef BaseClass::value_type PETScWrappers::MPI::BlockVector::value_type

Import the typedefs from the base class.

Definition at line 78 of file petsc_parallel_block_vector.h.

Constructor & Destructor Documentation

◆ BlockVector() [1/6]

PETScWrappers::MPI::BlockVector::BlockVector ( )

default

Default constructor. Generate an empty vector without any blocks.

◆ BlockVector() [2/6]

BlockVector< Number >::BlockVector	(	const unsigned int	n_blocks,
		const MPI_Comm &	communicator,
		const size_type	block_size,
		const size_type	local_size
	)

inlineexplicit

Constructor. Generate a block vector with n_blocks blocks, each of which is a parallel vector across communicator with block_size elements of which local_size elements are stored on the present process.

Definition at line 285 of file petsc_parallel_block_vector.h.

◆ BlockVector() [3/6]

BlockVector< Number >::BlockVector ( const BlockVector & V )

inline

Copy constructor. Set all the properties of the parallel vector to those of the given argument and copy the elements.

Definition at line 305 of file petsc_parallel_block_vector.h.

◆ BlockVector() [4/6]

BlockVector< Number >::BlockVector	(	const std::vector< size_type > &	block_sizes,
		const MPI_Comm &	communicator,
		const std::vector< size_type > &	local_elements
	)

inline

Constructor. Set the number of blocks to block_sizes.size() and initialize each block with block_sizes[i] zero elements. The individual blocks are distributed across the given communicator, and each store local_elements[i] elements on the present process.

Definition at line 296 of file petsc_parallel_block_vector.h.

◆ BlockVector() [5/6]

BlockVector< Number >::BlockVector	(	const std::vector< IndexSet > &	parallel_partitioning,
		const MPI_Comm &	communicator = `MPI_COMM_WORLD`
	)

inlineexplicit

Create a BlockVector with parallel_partitioning.size() blocks, each initialized with the given IndexSet.

Definition at line 317 of file petsc_parallel_block_vector.h.

◆ BlockVector() [6/6]

BlockVector< Number >::BlockVector	(	const std::vector< IndexSet > &	parallel_partitioning,
		const std::vector< IndexSet > &	ghost_indices,
		const MPI_Comm &	communicator
	)

inline

Same as above, but include ghost elements

Definition at line 324 of file petsc_parallel_block_vector.h.

◆ ~BlockVector()

PETScWrappers::MPI::BlockVector::~BlockVector ( )

default

Destructor. Clears memory

Member Function Documentation

◆ operator=() [1/2]

BlockVector & BlockVector< Number >::operator= ( const value_type s )

inline

Copy operator: fill all components of the vector that are locally stored with the given scalar value.

Definition at line 333 of file petsc_parallel_block_vector.h.

◆ operator=() [2/2]

BlockVector & BlockVector< Number >::operator= ( const BlockVector & V )

inline

Copy operator for arguments of the same type.

Definition at line 341 of file petsc_parallel_block_vector.h.

◆ reinit() [1/6]

void BlockVector< Number >::reinit	(	const unsigned int	n_blocks,
		const MPI_Comm &	communicator,
		const size_type	block_size,
		const size_type	local_size,
		const bool	omit_zeroing_entries = `false`
	)

inline

Reinitialize the BlockVector to contain n_blocks of size block_size, each of which stores local_size elements locally. The communicator argument denotes which MPI channel each of these blocks shall communicate.

If omit_zeroing_entries==false, the vector is filled with zeros.

Definition at line 363 of file petsc_parallel_block_vector.h.

◆ reinit() [2/6]

void BlockVector< Number >::reinit	(	const std::vector< size_type > &	block_sizes,
		const MPI_Comm &	communicator,
		const std::vector< size_type > &	local_sizes,
		const bool	omit_zeroing_entries = `false`
	)

inline

Reinitialize the BlockVector such that it contains block_sizes.size() blocks. Each block is reinitialized to dimension block_sizes[i]. Each of them stores local_sizes[i] elements on the present process.

If the number of blocks is the same as before this function was called, all vectors remain the same and reinit() is called for each vector.

If omit_zeroing_entries==false, the vector is filled with zeros.

Note that you must call this (or the other reinit() functions) function, rather than calling the reinit() functions of an individual block, to allow the block vector to update its caches of vector sizes. If you call reinit() of one of the blocks, then subsequent actions on this object may yield unpredictable results since they may be routed to the wrong block.

Definition at line 379 of file petsc_parallel_block_vector.h.

◆ reinit() [3/6]

void BlockVector< Number >::reinit	(	const BlockVector &	V,
		const bool	omit_zeroing_entries = `false`
	)

inline

Change the dimension to that of the vector V. The same applies as for the other reinit() function.

The elements of V are not copied, i.e. this function is the same as calling reinit (V.size(), omit_zeroing_entries).

Note that you must call this (or the other reinit() functions) function, rather than calling the reinit() functions of an individual block, to allow the block vector to update its caches of vector sizes. If you call reinit() on one of the blocks, then subsequent actions on this object may yield unpredictable results since they may be routed to the wrong block.

Definition at line 396 of file petsc_parallel_block_vector.h.

◆ reinit() [4/6]

void BlockVector< Number >::reinit	(	const std::vector< IndexSet > &	parallel_partitioning,
		const MPI_Comm &	communicator
	)

inline

Reinitialize the BlockVector using IndexSets. See the constructor with the same arguments for details.

Definition at line 409 of file petsc_parallel_block_vector.h.

◆ reinit() [5/6]

void BlockVector< Number >::reinit	(	const std::vector< IndexSet > &	parallel_partitioning,
		const std::vector< IndexSet > &	ghost_entries,
		const MPI_Comm &	communicator
	)

inline

Same as above but include ghost entries.

Definition at line 426 of file petsc_parallel_block_vector.h.

◆ reinit() [6/6]

void BlockVector< Number >::reinit ( const unsigned int num_blocks )

Change the number of blocks to num_blocks. The individual blocks will get initialized with zero size, so it is assumed that the user resizes the individual blocks by herself in an appropriate way, and calls collect_sizes afterwards.

Definition at line 29 of file petsc_parallel_block_vector.cc.

◆ has_ghost_elements()

bool BlockVector< Number >::has_ghost_elements ( ) const

inline

Return if this vector is a ghosted vector (and thus read-only).

Definition at line 453 of file petsc_parallel_block_vector.h.

◆ get_mpi_communicator()

const MPI_Comm & BlockVector< Number >::get_mpi_communicator ( ) const

inline

Return a reference to the MPI communicator object in use with this vector.

Definition at line 446 of file petsc_parallel_block_vector.h.

◆ swap()

void BlockVector< Number >::swap ( BlockVector & v )

inline

Swap the contents of this vector and the other vector v. One could do this operation with a temporary variable and copying over the data elements, but this function is significantly more efficient since it only swaps the pointers to the data of the two vectors and therefore does not need to allocate temporary storage and move data around.

Limitation: right now this function only works if both vectors have the same number of blocks. If needed, the numbers of blocks should be exchanged, too.

This function is analogous to the swap() function of all C++ standard containers. Also, there is a global function swap(u,v) that simply calls u.swap(v), again in analogy to standard functions.

Definition at line 466 of file petsc_parallel_block_vector.h.

◆ print()

void BlockVector< Number >::print	(	std::ostream &	out,
		const unsigned int	precision = `3`,
		const bool	scientific = `true`,
		const bool	across = `true`
	)		const

inline

Print to a stream.

Definition at line 477 of file petsc_parallel_block_vector.h.

Friends And Related Function Documentation

◆ swap()

void swap	(	BlockVector &	u,
		BlockVector &	v
	)

Author: Wolfgang Bangerth, 2000

Definition at line 503 of file petsc_parallel_block_vector.h.

The documentation for this class was generated from the following files:

deal.II/lac/petsc_parallel_block_vector.h
source/lac/petsc_parallel_block_vector.cc

Public Types

Public Member Functions

Static Public Member Functions

Related Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ BaseClass

◆ BlockType

◆ value_type

Constructor & Destructor Documentation

◆ BlockVector() [1/6]

◆ BlockVector() [2/6]

◆ BlockVector() [3/6]

◆ BlockVector() [4/6]

◆ BlockVector() [5/6]

◆ BlockVector() [6/6]

◆ ~BlockVector()

Member Function Documentation

◆ operator=() [1/2]

◆ operator=() [2/2]

◆ reinit() [1/6]

◆ reinit() [2/6]

◆ reinit() [3/6]

◆ reinit() [4/6]

◆ reinit() [5/6]

◆ reinit() [6/6]

◆ has_ghost_elements()

◆ get_mpi_communicator()

◆ swap()

◆ print()

Friends And Related Function Documentation

◆ swap()