mg_transfer_block.cc

// ---------------------------------------------------------------------
//
// Copyright (C) 2003 - 2016 by the deal.II authors
//
// This file is part of the deal.II library.
//
// The deal.II library is free software; you can use it, redistribute
// it, and/or modify it under the terms of the GNU Lesser General
// Public License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
// The full text of the license can be found in the file LICENSE at
// the top level of the deal.II distribution.
//
// ---------------------------------------------------------------------


#include <deal.II/base/logstream.h>

#include <deal.II/lac/vector.h>
#include <deal.II/lac/block_vector.h>
#include <deal.II/lac/sparse_matrix.h>
#include <deal.II/lac/block_sparse_matrix.h>
#include <deal.II/grid/tria.h>
#include <deal.II/grid/tria_iterator.h>
#include <deal.II/dofs/dof_tools.h>
#include <deal.II/fe/fe.h>
#include <deal.II/dofs/dof_accessor.h>
#include <deal.II/multigrid/mg_transfer_block.h>
#include <deal.II/multigrid/mg_transfer_block.templates.h>
#include <deal.II/multigrid/mg_tools.h>

#include <algorithm>
#include <numeric>
#include <iostream>
#include <utility>

DEAL_II_NAMESPACE_OPEN

namespace
{
  template <int dim, typename number, int spacedim>
  void
  reinit_vector_by_blocks (
    const ::DoFHandler<dim,spacedim> &mg_dof,
    MGLevelObject<BlockVector<number> > &v,
    const std::vector<bool> &sel,
    std::vector<std::vector<types::global_dof_index> > &ndofs)
  {
    std::vector<bool> selected=sel;
    // Compute the number of blocks needed
    const unsigned int n_selected
      = std::accumulate(selected.begin(),
                        selected.end(),
                        0U);

    if (ndofs.size() == 0)
      {
        std::vector<std::vector<types::global_dof_index> >
        new_dofs(mg_dof.get_triangulation().n_levels(),
                 std::vector<types::global_dof_index>(selected.size()));
        std::swap(ndofs, new_dofs);
        MGTools::count_dofs_per_block (mg_dof, ndofs);
      }

    for (unsigned int level=v.min_level();
         level<=v.max_level(); ++level)
      {
        v[level].reinit(n_selected, 0);
        unsigned int k=0;
        for (unsigned int i=0; i<selected.size() && (k<v[level].n_blocks()); ++i)
          {
            if (selected[i])
              {
                v[level].block(k++).reinit(ndofs[level][i]);
              }
            v[level].collect_sizes();
          }
      }
  }


  template <int dim, typename number, int spacedim>
  void
  reinit_vector_by_blocks (
    const ::DoFHandler<dim,spacedim> &mg_dof,
    MGLevelObject<::Vector<number> > &v,
    const unsigned int selected_block,
    std::vector<std::vector<types::global_dof_index> > &ndofs)
  {
    const unsigned int n_blocks = mg_dof.get_fe().n_blocks();
    Assert(selected_block < n_blocks, ExcIndexRange(selected_block, 0, n_blocks));

    std::vector<bool> selected(n_blocks, false);
    selected[selected_block] = true;

    if (ndofs.size() == 0)
      {
        std::vector<std::vector<types::global_dof_index> >
        new_dofs(mg_dof.get_triangulation().n_levels(),
                 std::vector<types::global_dof_index>(selected.size()));
        std::swap(ndofs, new_dofs);
        MGTools::count_dofs_per_block (mg_dof, ndofs);
      }

    for (unsigned int level=v.min_level();
         level<=v.max_level(); ++level)
      {
        v[level].reinit(ndofs[level][selected_block]);
      }
  }
}


template <typename number>
template <int dim, typename number2, int spacedim>
void
MGTransferBlockSelect<number>::copy_to_mg (
  const DoFHandler<dim,spacedim>        &mg_dof_handler,
  MGLevelObject<Vector<number> > &dst,
  const BlockVector<number2>     &src) const
{
  reinit_vector_by_blocks(mg_dof_handler, dst, selected_block, sizes);
  // For MGTransferBlockSelect, the
  // multilevel block is always the
  // first, since only one block is
  // selected.
  for (unsigned int level=mg_dof_handler.get_triangulation().n_levels(); level != 0;)
    {
      --level;
      for (IT i= copy_indices[selected_block][level].begin();
           i != copy_indices[selected_block][level].end(); ++i)
        dst[level](i->second) = src.block(selected_block)(i->first);
    }
}



template <typename number>
template <int dim, typename number2, int spacedim>
void
MGTransferBlockSelect<number>::copy_to_mg (
  const DoFHandler<dim,spacedim>        &mg_dof_handler,
  MGLevelObject<Vector<number> > &dst,
  const Vector<number2>          &src) const
{
  reinit_vector_by_blocks(mg_dof_handler, dst, selected_block, sizes);
  // For MGTransferBlockSelect, the
  // multilevel block is always the
  // first, since only one block is selected.
  for (unsigned int level=mg_dof_handler.get_triangulation().n_levels(); level != 0;)
    {
      --level;
      for (IT i= copy_indices[selected_block][level].begin();
           i != copy_indices[selected_block][level].end(); ++i)
        dst[level](i->second) = src(i->first);
    }
}



template <typename number>
template <int dim, typename number2, int spacedim>
void
MGTransferBlock<number>::copy_to_mg (
  const DoFHandler<dim,spacedim> &mg_dof_handler,
  MGLevelObject<BlockVector<number> > &dst,
  const BlockVector<number2> &src) const
{
  reinit_vector_by_blocks(mg_dof_handler, dst, selected, sizes);
  for (unsigned int level=mg_dof_handler.get_triangulation().n_levels(); level != 0;)
    {
      --level;
      for (unsigned int block=0; block<selected.size(); ++block)
        if (selected[block])
          for (IT i= copy_indices[block][level].begin();
               i != copy_indices[block][level].end(); ++i)
            dst[level].block(mg_block[block])(i->second) = src.block(block)(i->first);
    }
}



template <int dim, int spacedim>
void MGTransferBlockBase::build_matrices (
  const DoFHandler<dim,spacedim> &,
  const DoFHandler<dim,spacedim> &mg_dof)
{
  const FiniteElement<dim> &fe = mg_dof.get_fe();
  const unsigned int n_blocks  = fe.n_blocks();
  const unsigned int dofs_per_cell = fe.dofs_per_cell;
  const unsigned int n_levels      = mg_dof.get_triangulation().n_levels();

  Assert (selected.size() == n_blocks,
          ExcDimensionMismatch(selected.size(), n_blocks));

  // Compute the mapping between real
  // blocks and blocks used for
  // multigrid computations.
  mg_block.resize(n_blocks);
  n_mg_blocks = 0;
  for (unsigned int i=0; i<n_blocks; ++i)
    if (selected[i])
      mg_block[i] = n_mg_blocks++;
    else
      mg_block[i] = numbers::invalid_unsigned_int;

  // Compute the lengths of all blocks
  sizes.clear ();
  sizes.resize(n_levels, std::vector<types::global_dof_index>(fe.n_blocks()));
  MGTools::count_dofs_per_block(mg_dof, sizes);

  // Fill some index vectors
  // for later use.
  mg_block_start = sizes;
  // Compute start indices from sizes
  for (unsigned int l=0; l<mg_block_start.size(); ++l)
    {
      types::global_dof_index k=0;
      for (unsigned int i=0; i<mg_block_start[l].size(); ++i)
        {
          const types::global_dof_index t=mg_block_start[l][i];
          mg_block_start[l][i] = k;
          k += t;
        }
    }

  block_start.resize(n_blocks);
  DoFTools::count_dofs_per_block (static_cast<const DoFHandler<dim,spacedim>&>(mg_dof),
                                  block_start);

  types::global_dof_index k=0;
  for (unsigned int i=0; i<block_start.size(); ++i)
    {
      const types::global_dof_index t=block_start[i];
      block_start[i] = k;
      k += t;
    }
  // Build index vectors for
  // copy_to_mg and
  // copy_from_mg. These vectors must
  // be prebuilt, since the
  // get_dof_indices functions are
  // too slow
  copy_indices.resize(n_blocks);
  for (unsigned int block=0; block<n_blocks; ++block)
    if (selected[block])
      copy_indices[block].resize(n_levels);

// Building the prolongation matrices starts here!

  // reset the size of the array of
  // matrices. call resize(0) first,
  // in order to delete all elements
  // and clear their memory. then
  // repopulate these arrays
  //
  // note that on resize(0), the
  // shared_ptr class takes care of
  // deleting the object it points to
  // by itself
  prolongation_matrices.resize (0);
  prolongation_sparsities.resize (0);

  for (unsigned int i=0; i<n_levels-1; ++i)
    {
      prolongation_sparsities
      .push_back (std_cxx11::shared_ptr<BlockSparsityPattern> (new BlockSparsityPattern));
      prolongation_matrices
      .push_back (std_cxx11::shared_ptr<BlockSparseMatrix<double> > (new BlockSparseMatrix<double>));
    }

  // two fields which will store the
  // indices of the multigrid dofs
  // for a cell and one of its children
  std::vector<types::global_dof_index> dof_indices_parent (dofs_per_cell);
  std::vector<types::global_dof_index> dof_indices_child (dofs_per_cell);

  // for each level: first build the
  // sparsity pattern of the matrices
  // and then build the matrices
  // themselves. note that we only
  // need to take care of cells on
  // the coarser level which have
  // children

  for (unsigned int level=0; level<n_levels-1; ++level)
    {
      // reset the dimension of the
      // structure.  note that for
      // the number of entries per
      // row, the number of parent
      // dofs coupling to a child dof
      // is necessary. this, is the
      // number of degrees of freedom
      // per cell
      prolongation_sparsities[level]->reinit (n_blocks, n_blocks);
      for (unsigned int i=0; i<n_blocks; ++i)
        for (unsigned int j=0; j<n_blocks; ++j)
          if (i==j)
            prolongation_sparsities[level]->block(i,j)
            .reinit(sizes[level+1][i],
                    sizes[level][j],
                    dofs_per_cell+1);
          else
            prolongation_sparsities[level]->block(i,j)
            .reinit(sizes[level+1][i],
                    sizes[level][j],
                    0);

      prolongation_sparsities[level]->collect_sizes();

      for (typename DoFHandler<dim,spacedim>::cell_iterator cell=mg_dof.begin(level);
           cell != mg_dof.end(level); ++cell)
        if (cell->has_children())
          {
            cell->get_mg_dof_indices (dof_indices_parent);

            Assert(cell->n_children()==GeometryInfo<dim>::max_children_per_cell,
                   ExcNotImplemented());
            for (unsigned int child=0; child<cell->n_children(); ++child)
              {
                // set an alias to the
                // prolongation matrix for
                // this child
                const FullMatrix<double> &prolongation
                  = mg_dof.get_fe().get_prolongation_matrix (child, cell->refinement_case());

                cell->child(child)->get_mg_dof_indices (dof_indices_child);

                // now tag the entries in the
                // matrix which will be used
                // for this pair of parent/child
                for (unsigned int i=0; i<dofs_per_cell; ++i)
                  for (unsigned int j=0; j<dofs_per_cell; ++j)
                    if (prolongation(i,j) != 0)
                      {
                        const unsigned int icomp
                          = fe.system_to_block_index(i).first;
                        const unsigned int jcomp
                          = fe.system_to_block_index(j).first;
                        if ((icomp==jcomp) && selected[icomp])
                          prolongation_sparsities[level]->add(dof_indices_child[i],
                                                              dof_indices_parent[j]);
                      };
              };
          };
      prolongation_sparsities[level]->compress ();

      prolongation_matrices[level]->reinit (*prolongation_sparsities[level]);
      // now actually build the matrices
      for (typename DoFHandler<dim,spacedim>::cell_iterator cell=mg_dof.begin(level);
           cell != mg_dof.end(level); ++cell)
        if (cell->has_children())
          {
            cell->get_mg_dof_indices (dof_indices_parent);

            Assert(cell->n_children()==GeometryInfo<dim>::max_children_per_cell,
                   ExcNotImplemented());
            for (unsigned int child=0; child<cell->n_children(); ++child)
              {
                // set an alias to the
                // prolongation matrix for
                // this child
                const FullMatrix<double> &prolongation
                  = mg_dof.get_fe().get_prolongation_matrix (child, cell->refinement_case());

                cell->child(child)->get_mg_dof_indices (dof_indices_child);

                // now set the entries in the
                // matrix
                for (unsigned int i=0; i<dofs_per_cell; ++i)
                  for (unsigned int j=0; j<dofs_per_cell; ++j)
                    if (prolongation(i,j) != 0)
                      {
                        const unsigned int icomp = fe.system_to_block_index(i).first;
                        const unsigned int jcomp = fe.system_to_block_index(j).first;
                        if ((icomp==jcomp) && selected[icomp])
                          prolongation_matrices[level]->set(dof_indices_child[i],
                                                            dof_indices_parent[j],
                                                            prolongation(i,j));
                      }
              }
          }
    }
  // impose boundary conditions
  // but only in the column of
  // the prolongation matrix
  if (mg_constrained_dofs != 0 && mg_constrained_dofs->have_boundary_indices())
    {
      std::vector<types::global_dof_index> constrain_indices;
      std::vector<std::vector<bool> > constraints_per_block (n_blocks);
      for (int level=n_levels-2; level>=0; --level)
        {
          if (mg_constrained_dofs->get_boundary_indices(level).n_elements() == 0)
            continue;

          // need to delete all the columns in the
          // matrix that are on the boundary. to achieve
          // this, create an array as long as there are
          // matrix columns, and find which columns we
          // need to filter away.
          constrain_indices.resize (0);
          constrain_indices.resize (prolongation_matrices[level]->n(), 0);
          IndexSet::ElementIterator dof
          = mg_constrained_dofs->get_boundary_indices(level).begin(),
          endd = mg_constrained_dofs->get_boundary_indices(level).end();
          for (; dof != endd; ++dof)
            constrain_indices[*dof] = 1;

          unsigned int index = 0;
          for (unsigned int block=0; block<n_blocks; ++block)
            {
              const types::global_dof_index n_dofs = prolongation_matrices[level]->block(block, block).m();
              constraints_per_block[block].resize(0);
              constraints_per_block[block].resize(n_dofs, 0);
              for (types::global_dof_index i=0; i<n_dofs; ++i, ++index)
                constraints_per_block[block][i] = (constrain_indices[index] == 1);

              for (types::global_dof_index i=0; i<n_dofs; ++i)
                {
                  SparseMatrix<double>::iterator
                  start_row = prolongation_matrices[level]->block(block, block).begin(i),
                  end_row   = prolongation_matrices[level]->block(block, block).end(i);
                  for (; start_row != end_row; ++start_row)
                    {
                      if (constraints_per_block[block][start_row->column()])
                        start_row->value() = 0.;
                    }
                }
            }
        }
    }
}



template <typename number>
template <int dim, int spacedim>
void MGTransferBlockSelect<number>::build_matrices (
  const DoFHandler<dim,spacedim> &dof,
  const DoFHandler<dim,spacedim> &mg_dof,
  unsigned int select)
{
  const FiniteElement<dim> &fe = mg_dof.get_fe();
  unsigned int n_blocks = mg_dof.get_fe().n_blocks();

  selected_block = select;
  selected.resize(n_blocks, false);
  selected[select] = true;

  MGTransferBlockBase::build_matrices (dof, mg_dof);

  std::vector<types::global_dof_index> temp_copy_indices;
  std::vector<types::global_dof_index> global_dof_indices (fe.dofs_per_cell);
  std::vector<types::global_dof_index> level_dof_indices  (fe.dofs_per_cell);

  for (int level=dof.get_triangulation().n_levels()-1; level>=0; --level)
    {
      typename DoFHandler<dim,spacedim>::active_cell_iterator
      level_cell = mg_dof.begin_active(level);
      const typename DoFHandler<dim,spacedim>::active_cell_iterator
      level_end  = mg_dof.end_active(level);

      temp_copy_indices.resize (0);
      temp_copy_indices.resize (sizes[level][selected_block],
                                numbers::invalid_dof_index);

      // Compute coarse level right hand side
      // by restricting from fine level.
      for (; level_cell!=level_end; ++level_cell)
        {
          // get the dof numbers of
          // this cell for the global
          // and the level-wise
          // numbering
          level_cell->get_dof_indices(global_dof_indices);
          level_cell->get_mg_dof_indices (level_dof_indices);

          for (unsigned int i=0; i<fe.dofs_per_cell; ++i)
            {
              const unsigned int block = fe.system_to_block_index(i).first;
              if (selected[block])
                {
                  if (mg_constrained_dofs != 0)
                    {
                      if (!mg_constrained_dofs->at_refinement_edge(level,level_dof_indices[i]))
                        temp_copy_indices[level_dof_indices[i] - mg_block_start[level][block]]
                          = global_dof_indices[i] - block_start[block];
                    }
                  else
                    temp_copy_indices[level_dof_indices[i] - mg_block_start[level][block]]
                      = global_dof_indices[i] - block_start[block];
                }
            }
        }

      // now all the active dofs got a valid entry,
      // the other ones have an invalid entry. Count
      // the invalid entries and then resize the
      // copy_indices object. Then, insert the pairs
      // of global index and level index into
      // copy_indices.
      const types::global_dof_index n_active_dofs =
        std::count_if (temp_copy_indices.begin(), temp_copy_indices.end(),
                       std_cxx11::bind (std::not_equal_to<types::global_dof_index>(),
                                        std_cxx11::_1,
                                        numbers::invalid_dof_index));
      copy_indices[selected_block][level].resize (n_active_dofs);
      types::global_dof_index counter = 0;
      for (types::global_dof_index i=0; i<temp_copy_indices.size(); ++i)
        if (temp_copy_indices[i] != numbers::invalid_dof_index)
          copy_indices[selected_block][level][counter++] =
            std::pair<types::global_dof_index, unsigned int> (temp_copy_indices[i], i);
      Assert (counter == n_active_dofs, ExcInternalError());
    }
}




template <typename number>
template <int dim, int spacedim>
void MGTransferBlock<number>::build_matrices (
  const DoFHandler<dim,spacedim> &dof,
  const DoFHandler<dim,spacedim> &mg_dof,
  const std::vector<bool> &sel)
{
  const FiniteElement<dim> &fe = mg_dof.get_fe();
  unsigned int n_blocks = mg_dof.get_fe().n_blocks();

  if (sel.size() != 0)
    {
      Assert(sel.size() == n_blocks,
             ExcDimensionMismatch(sel.size(), n_blocks));
      selected = sel;
    }
  if (selected.size() == 0)
    selected = std::vector<bool> (n_blocks, true);

  MGTransferBlockBase::build_matrices (dof, mg_dof);

  std::vector<std::vector<types::global_dof_index> > temp_copy_indices (n_blocks);
  std::vector<types::global_dof_index> global_dof_indices (fe.dofs_per_cell);
  std::vector<types::global_dof_index> level_dof_indices  (fe.dofs_per_cell);
  for (int level=dof.get_triangulation().n_levels()-1; level>=0; --level)
    {
      typename DoFHandler<dim,spacedim>::active_cell_iterator
      level_cell = mg_dof.begin_active(level);
      const typename DoFHandler<dim,spacedim>::active_cell_iterator
      level_end  = mg_dof.end_active(level);

      for (unsigned int block=0; block<n_blocks; ++block)
        if (selected[block])
          {
            temp_copy_indices[block].resize (0);
            temp_copy_indices[block].resize (sizes[level][block],
                                             numbers::invalid_dof_index);
          }

      // Compute coarse level right hand side
      // by restricting from fine level.
      for (; level_cell!=level_end; ++level_cell)
        {
          // get the dof numbers of
          // this cell for the global
          // and the level-wise
          // numbering
          level_cell->get_dof_indices(global_dof_indices);
          level_cell->get_mg_dof_indices (level_dof_indices);

          for (unsigned int i=0; i<fe.dofs_per_cell; ++i)
            {
              const unsigned int block = fe.system_to_block_index(i).first;
              if (selected[block])
                temp_copy_indices[block][level_dof_indices[i] - mg_block_start[level][block]]
                  = global_dof_indices[i] - block_start[block];
            }
        }

      for (unsigned int block=0; block<n_blocks; ++block)
        if (selected[block])
          {
            const types::global_dof_index n_active_dofs =
              std::count_if (temp_copy_indices[block].begin(),
                             temp_copy_indices[block].end(),
                             std_cxx11::bind (std::not_equal_to<types::global_dof_index>(),
                                              std_cxx11::_1,
                                              numbers::invalid_dof_index));
            copy_indices[block][level].resize (n_active_dofs);
            types::global_dof_index counter = 0;
            for (types::global_dof_index i=0; i<temp_copy_indices[block].size(); ++i)
              if (temp_copy_indices[block][i] != numbers::invalid_dof_index)
                copy_indices[block][level][counter++] =
                  std::pair<types::global_dof_index, unsigned int>
                  (temp_copy_indices[block][i], i);
            Assert (counter == n_active_dofs, ExcInternalError());
          }
    }
}



// explicit instantiations
#include "mg_transfer_block.inst"


DEAL_II_NAMESPACE_CLOSE