Reference documentation for deal.II version 8.5.1
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#include <deal.II/distributed/solution_transfer.h>
Public Member Functions | |
SolutionTransfer (const DoFHandlerType &dof) | |
~SolutionTransfer () | |
void | prepare_for_coarsening_and_refinement (const std::vector< const VectorType *> &all_in) |
void | prepare_for_coarsening_and_refinement (const VectorType &in) |
void | interpolate (std::vector< VectorType *> &all_out) |
void | interpolate (VectorType &out) |
unsigned int | get_data_size () const |
void | prepare_serialization (const VectorType &in) |
void | prepare_serialization (const std::vector< const VectorType *> &all_in) |
void | deserialize (VectorType &in) |
void | deserialize (std::vector< VectorType *> &all_in) |
Private Member Functions | |
void | pack_callback (const typename Triangulation< dim, DoFHandlerType::space_dimension >::cell_iterator &cell, const typename Triangulation< dim, DoFHandlerType::space_dimension >::CellStatus status, void *data) |
void | unpack_callback (const typename Triangulation< dim, DoFHandlerType::space_dimension >::cell_iterator &cell, const typename Triangulation< dim, DoFHandlerType::space_dimension >::CellStatus status, const void *data, std::vector< VectorType *> &all_out) |
Private Attributes | |
SmartPointer< const DoFHandlerType, SolutionTransfer< dim, VectorType, DoFHandlerType > > | dof_handler |
std::vector< const VectorType * > | input_vectors |
unsigned int | offset |
Transfers a discrete FE function (like a solution vector) by interpolation while refining and/or coarsening a distributed grid and handles the necessary communication.
In a parallel computation PETSc or Trilinos vector may contain ghost elements or not. For reading in information with prepare_for_coarsening_and_refinement() or prepare_serialization() you need to supply vectors with ghost elements, so that all locally_active elements can be read. On the other hand, ghosted vectors are generally not writable, so for calls to interpolate() or deserialize() you need to supply distributed vectors without ghost elements.
Here VectorType is your favorite vector type, e.g. PETScWrappers::MPI::Vector, TrilinosWrappers::MPI::Vector, or corresponding blockvectors.
This class can be used to serialize and later deserialize a distributed mesh with solution vectors to a file. If you use more than one DoFHandler and therefore more than one SolutionTransfer object, they need to be serialized and deserialized in the same order.
If vector has the locally relevant DoFs, serialization works as follows: *
For deserialization the vector needs to be a distributed vector (without ghost elements):
In essence, this class implements the same steps as does SolutionTransfer (though the implementation is entirely separate). Consequently, the same issue with hanging nodes and coarsening can happen with this class as happens with SolutionTransfer. See there for an extended discussion.
Definition at line 116 of file solution_transfer.h.
SolutionTransfer< dim, VectorType, DoFHandlerType >::SolutionTransfer | ( | const DoFHandlerType & | dof | ) |
Constructor, takes the current DoFHandler as argument.
Definition at line 47 of file solution_transfer.cc.
SolutionTransfer< dim, VectorType, DoFHandlerType >::~SolutionTransfer | ( | ) |
Destructor.
Definition at line 60 of file solution_transfer.cc.
void SolutionTransfer< dim, VectorType, DoFHandlerType >::prepare_for_coarsening_and_refinement | ( | const std::vector< const VectorType *> & | all_in | ) |
Prepares the SolutionTransfer
for coarsening and refinement. It stores the dof indices of each cell and stores the dof values of the vectors in all_in
in each cell that'll be coarsened. all_in
includes all vectors that are to be interpolated onto the new (refined and/or coarsened) grid.
Definition at line 68 of file solution_transfer.cc.
void SolutionTransfer< dim, VectorType, DoFHandlerType >::prepare_for_coarsening_and_refinement | ( | const VectorType & | in | ) |
Same as previous function but for only one discrete function to be interpolated.
Definition at line 105 of file solution_transfer.cc.
void SolutionTransfer< dim, VectorType, DoFHandlerType >::interpolate | ( | std::vector< VectorType *> & | all_out | ) |
Interpolate the data previously stored in this object before the mesh was refined or coarsened onto the current set of cells. Do so for each of the vectors provided to prepare_for_coarsening_and_refinement() and write the result into the given set of vectors.
Definition at line 158 of file solution_transfer.cc.
void SolutionTransfer< dim, VectorType, DoFHandlerType >::interpolate | ( | VectorType & | out | ) |
Same as the previous function. It interpolates only one function. It assumes the vectors having the right sizes (i.e. in.size()==n_dofs_old
, out.size()==n_dofs_refined
)
Multiple calling of this function is NOT allowed. Interpolating several functions can be performed in one step by using interpolate (all_in, all_out)
Definition at line 192 of file solution_transfer.cc.
unsigned int SolutionTransfer< dim, VectorType, DoFHandlerType >::get_data_size | ( | ) | const |
Return the size in bytes that need to be stored per cell.
Definition at line 202 of file solution_transfer.cc.
void SolutionTransfer< dim, VectorType, DoFHandlerType >::prepare_serialization | ( | const VectorType & | in | ) |
Prepare the serialization of the given vector. The serialization is done by Triangulation::save(). The given vector needs all information on the locally active DoFs (it must be ghosted). See documentation of this class for more information.
Definition at line 115 of file solution_transfer.cc.
void SolutionTransfer< dim, VectorType, DoFHandlerType >::prepare_serialization | ( | const std::vector< const VectorType *> & | all_in | ) |
Same as the function above, only for a list of vectors.
Definition at line 126 of file solution_transfer.cc.
void SolutionTransfer< dim, VectorType, DoFHandlerType >::deserialize | ( | VectorType & | in | ) |
Execute the deserialization of the given vector. This needs to be done after calling Triangulation::load(). The given vector must be a fully distributed vector without ghost elements. See documentation of this class for more information.
Definition at line 135 of file solution_transfer.cc.
void SolutionTransfer< dim, VectorType, DoFHandlerType >::deserialize | ( | std::vector< VectorType *> & | all_in | ) |
Same as the function above, only for a list of vectors.
Definition at line 145 of file solution_transfer.cc.
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A callback function used to pack the data on the current mesh into objects that can later be retrieved after refinement, coarsening and repartitioning.
Definition at line 211 of file solution_transfer.cc.
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A callback function used to unpack the data on the current mesh that has been packed up previously on the mesh before refinement, coarsening and repartitioning.
Definition at line 235 of file solution_transfer.cc.
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Pointer to the degree of freedom handler to work with.
Definition at line 203 of file solution_transfer.h.
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A vector that stores pointers to all the vectors we are supposed to copy over from the old to the new mesh.
Definition at line 209 of file solution_transfer.h.
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The offset that the Triangulation has assigned to this object starting at which we are allowed to write.
Definition at line 215 of file solution_transfer.h.