Reference documentation for deal.II version 8.5.1
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#include <deal.II/lac/parpack_solver.h>
Classes | |
struct | AdditionalData |
class | Shift |
Public Member Functions | |
SolverControl & | control () const |
PArpackSolver (SolverControl &control, const MPI_Comm &mpi_communicator, const AdditionalData &data=AdditionalData()) | |
void | reinit (const IndexSet &locally_owned_dofs) |
void | reinit (const IndexSet &locally_owned_dofs, const std::vector< IndexSet > &partitioning) |
void | reinit (const VectorType &distributed_vector) |
void | set_initial_vector (const VectorType &vec) |
void | set_shift (const std::complex< double > sigma) |
template<typename MatrixType1 , typename MatrixType2 , typename INVERSE > | |
void | solve (const MatrixType1 &A, const MatrixType2 &B, const INVERSE &inverse, std::vector< std::complex< double > > &eigenvalues, std::vector< VectorType > &eigenvectors, const unsigned int n_eigenvalues) |
Public Member Functions inherited from Subscriptor | |
Subscriptor () | |
Subscriptor (const Subscriptor &) | |
Subscriptor (Subscriptor &&) | |
virtual | ~Subscriptor () |
Subscriptor & | operator= (const Subscriptor &) |
Subscriptor & | operator= (Subscriptor &&) |
void | subscribe (const char *identifier=0) const |
void | unsubscribe (const char *identifier=0) const |
unsigned int | n_subscriptions () const |
void | list_subscribers () const |
template<class Archive > | |
void | serialize (Archive &ar, const unsigned int version) |
Protected Attributes | |
SolverControl & | solver_control |
const AdditionalData | additional_data |
MPI_Comm | mpi_communicator |
MPI_Fint | mpi_communicator_fortran |
int | lworkl |
std::vector< double > | workl |
std::vector< double > | workd |
int | nloc |
int | ncv |
int | ldv |
std::vector< double > | v |
bool | initial_vector_provided |
std::vector< double > | resid |
int | ldz |
std::vector< double > | z |
int | lworkev |
std::vector< double > | workev |
std::vector< int > | select |
VectorType | src |
std::vector< types::global_dof_index > | local_indices |
double | sigmar |
double | sigmai |
Private Member Functions | |
void | internal_reinit (const IndexSet &locally_owned_dofs) |
Static Private Member Functions | |
static ::ExceptionBase & | PArpackExcConvergedEigenvectors (int arg1, int arg2) |
static ::ExceptionBase & | PArpackExcInvalidNumberofEigenvalues (int arg1, int arg2) |
static ::ExceptionBase & | PArpackExcInvalidEigenvectorSize (int arg1, int arg2) |
static ::ExceptionBase & | PArpackExcInvalidEigenvectorSizeNonsymmetric (int arg1, int arg2) |
static ::ExceptionBase & | PArpackExcInvalidEigenvalueSize (int arg1, int arg2) |
static ::ExceptionBase & | PArpackExcInvalidNumberofArnoldiVectors (int arg1, int arg2) |
static ::ExceptionBase & | PArpackExcSmallNumberofArnoldiVectors (int arg1, int arg2) |
static ::ExceptionBase & | PArpackExcIdo (int arg1) |
static ::ExceptionBase & | PArpackExcMode (int arg1) |
static ::ExceptionBase & | PArpackExcInfoPdnaupd (int arg1) |
static ::ExceptionBase & | PArpackExcInfoPdneupd (int arg1) |
static ::ExceptionBase & | PArpackExcInfoMaxIt (int arg1) |
static ::ExceptionBase & | PArpackExcNoShifts (int arg1) |
Additional Inherited Members | |
Static Public Member Functions inherited from Subscriptor | |
static ::ExceptionBase & | ExcInUse (int arg1, char *arg2, std::string &arg3) |
static ::ExceptionBase & | ExcNoSubscriber (char *arg1, char *arg2) |
Interface for using PARPACK. PARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. Here we interface to the routines pdneupd
, pdseupd
, pdnaupd
, pdsaupd
of PARPACK. The package is designed to compute a few eigenvalues and corresponding eigenvectors of a general n by n matrix A. It is most appropriate for large sparse matrices A.
In this class we make use of the method applied to the generalized eigenspectrum problem \((A-\lambda B)x=0\), for \(x\neq0\); where \(A\) is a system matrix, \(B\) is a mass matrix, and \(\lambda, x\) are a set of eigenvalues and eigenvectors respectively.
The ArpackSolver can be used in application codes in the following way:
for the generalized eigenvalue problem \(Ax=B\lambda x\), where the variable size_of_spectrum
tells PARPACK the number of eigenvector/eigenvalue pairs to solve for. Here, lambda
is a vector that will contain the eigenvalues computed, x
a vector of objects of type V
that will contain the eigenvectors computed. OP
is an inverse operation for the matrix A - sigma * B
, where sigma
is a shift value, set to zero by default. Note that (P)Arpack supports other transformations, but currently this class implements only shift-and-invert mode.
The OP
can be specified either using auxiliary Shift class together with IterativeInverse or by using LinearOperator
Through the AdditionalData the user can specify some of the parameters to be set.
The class is intended to be used with MPI and can work on arbitrary vector and matrix distributed classes. Both symmetric and non-symmetric A
are supported.
For further information on how the PARPACK routines pdneupd
, pdseupd
, pdnaupd
, pdsaupd
work and also how to set the parameters appropriately please take a look into the PARPACK manual.
Definition at line 144 of file parpack_solver.h.
typedef types::global_dof_index PArpackSolver< VectorType >::size_type |
Declare the type for container size.
Definition at line 150 of file parpack_solver.h.
enum PArpackSolver::WhichEigenvalues |
An enum that lists the possible choices for which eigenvalues to compute in the solve() function. Note, that this corresponds to the problem after shift-and-invert (the only currently supported spectral transformation) is applied.
A particular choice is limited based on symmetric or non-symmetric matrix A
considered.
Definition at line 161 of file parpack_solver.h.
PArpackSolver< VectorType >::PArpackSolver | ( | SolverControl & | control, |
const MPI_Comm & | mpi_communicator, | ||
const AdditionalData & | data = AdditionalData() |
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) |
Constructor.
Definition at line 556 of file parpack_solver.h.
SolverControl & PArpackSolver< VectorType >::control | ( | ) | const |
Access to the object that controls convergence.
Definition at line 1020 of file parpack_solver.h.
void PArpackSolver< VectorType >::reinit | ( | const IndexSet & | locally_owned_dofs | ) |
Initialize internal variables.
Definition at line 637 of file parpack_solver.h.
void PArpackSolver< VectorType >::reinit | ( | const IndexSet & | locally_owned_dofs, |
const std::vector< IndexSet > & | partitioning | ||
) |
Initialize internal variables when working with BlockVectors. locally_owned_dofs
is used to set the dimension of the problem, whereas partitioning
is used for calling the reinit of the deal.II blockvectors used.
Definition at line 660 of file parpack_solver.h.
void PArpackSolver< VectorType >::reinit | ( | const VectorType & | distributed_vector | ) |
Initialize internal variables from the input distributed_vector
.
Definition at line 648 of file parpack_solver.h.
void PArpackSolver< VectorType >::set_initial_vector | ( | const VectorType & | vec | ) |
Set initial vector for building Krylov space.
Definition at line 584 of file parpack_solver.h.
void PArpackSolver< VectorType >::set_shift | ( | const std::complex< double > | sigma | ) |
Set shift sigma
for shift-and-invert spectral transformation.
If this function is not called, the shift is assumed to be zero.
Definition at line 576 of file parpack_solver.h.
void PArpackSolver< VectorType >::solve | ( | const MatrixType1 & | A, |
const MatrixType2 & | B, | ||
const INVERSE & | inverse, | ||
std::vector< std::complex< double > > & | eigenvalues, | ||
std::vector< VectorType > & | eigenvectors, | ||
const unsigned int | n_eigenvalues | ||
) |
Solve the generalized eigensprectrum problem \(A x=\lambda B x\) by calling the pd(n/s)eupd
and pd(n/s)aupd
functions of PARPACK.
Definition at line 674 of file parpack_solver.h.
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Initialize internal variables which depend on locally_owned_dofs
.
This function is called inside the reinit() functions
Definition at line 597 of file parpack_solver.h.
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Reference to the object that controls convergence of the iterative solver.
Definition at line 331 of file parpack_solver.h.
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protected |
Store a copy of the flags for this particular solver.
Definition at line 336 of file parpack_solver.h.
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C++ MPI communicator.
Definition at line 343 of file parpack_solver.h.
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Fortran MPI communicator.
Definition at line 348 of file parpack_solver.h.
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Length of the work array workl.
Definition at line 355 of file parpack_solver.h.
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Double precision work array of length lworkl
Definition at line 360 of file parpack_solver.h.
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Double precision work array of length 3*N
Definition at line 365 of file parpack_solver.h.
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Number of local degrees of freedom.
Definition at line 370 of file parpack_solver.h.
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Number of Arnoldi basis vectors specified in additional_data
Definition at line 375 of file parpack_solver.h.
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The leading dimension of the array v
Definition at line 381 of file parpack_solver.h.
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Double precision vector of size ldv by NCV. Will contains the final set of Arnoldi basis vectors.
Definition at line 387 of file parpack_solver.h.
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An auxiliary flag which is set to true when initial vector is provided.
Definition at line 392 of file parpack_solver.h.
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The initial residual vector, possibly from a previous run. On output, it contains the final residual vector.
Definition at line 398 of file parpack_solver.h.
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The leading dimension of the array Z equal to nloc.
Definition at line 403 of file parpack_solver.h.
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A vector of minimum size of nloc by NEV+1. Z contains the B-orthonormal Ritz vectors of the eigensystem A*z = lambda*B*z corresponding to the Ritz value approximations.
Definition at line 410 of file parpack_solver.h.
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The size of the workev array.
Definition at line 415 of file parpack_solver.h.
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Double precision work array of dimension 3* NCV.
Definition at line 420 of file parpack_solver.h.
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A vector of dimension NCV.
Definition at line 425 of file parpack_solver.h.
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Temporary vectors used between Arpack and deal.II
Definition at line 430 of file parpack_solver.h.
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Indices of local degrees of freedom.
Definition at line 435 of file parpack_solver.h.
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Real part of the shift
Definition at line 440 of file parpack_solver.h.
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Imaginary part of the shift
Definition at line 445 of file parpack_solver.h.